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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0368500.1

GAATTTGTACAACTATATCATTCAGAGTGAAGTAATACTTTTACAGGGCCCTGGAAGCTGGGACAAGTTTCAAACATAATTCCTCAAAAAGGTAACTAAAATACCACTTTCAGATTACTTGTTGAGACTATGGAGGATCATTCAGGATTTAGTAGAGTGAATTGCAGCTTGGACTGTCTCTTGTTACCATAGTTTCACTTTGAATCCGCTTTACCTTTTGCTTCACTTTGAACCCCCTTTTTCTTCTTCTCCAGCTCTGGAAATAGCATTATCTCCTAGGTCACACCACTTCCGCGGTTCTGCAGCCGCTGCCATAATACTGGCAGTGGATATGTGCCTGAGTTTGAGGAGAAGGGCAAAAAAAAAGGGGGGGGGGTGCAAAATGAAGCAAAAGGAAATAATAGGGGTCCAAAGTGAAATTATAGTAAGAAAAGGGGTCCAAAATGCAATTCACTCGATTTTAGTATACAGCCAACCAGAATCACTTTACTCCCTAAACAGCTAAACACCTTTAGATGCTGCTCCTTCTTGCTGATTAGCTTTCTCTGCTTCAAGCTTCCTTAAAGCAGATGAACTCAATTTCTCACCCTCTGCTCCTCCGGATAGAAGATCAACAACCTCAACCTTCAGCAAAGGTAGTCCTTTCTCTTCTCTTTTCCTATTTACGGCAAATCCACCATTTAATGTCTCCTTACTGACAATAATGGCATCCAACTTATCATCAATAATGGATGGGCCATAAGGATCCTCAATAGGCTCCACTTGTACTACCAGTTCTGGTTTAACAGACTTGATGTAATCCTCCACAGCCTTCATGCGCTTTTCGACGGGCTCGATCAACTCAGCGTACTCTTTCTTGGCGAGCATGGGGCCTGTGCAGACGCCCACCACGATCCGATCCCTCGCCAAATCCGCCGAGGCCTTGAGGAGGCGACGGTGGCCGTCGTGGAGGCGGTCGAAGGTGCCGCCGAGGACAACCGAGCCGTACGGCGGAGCATCCTCCTCCTGACTCGGCGGCGGCGGCGCTCCGGCGAAGGTGTCACCGGCGACGGGAGGAGTGATCATTTTCTTTTCCTACTTCAATCTGTCCACCTCTGCATGCTCTCGCTGGAGGAAGAAATGGATGCGGGGCGGTGGGAAGGAGGAGGCCGGCAAGGGGAGCGGCGACGGCGAGCCGACGGGGTCTCTCCGGTGATGTGGGCTGAGGTTGCCGGCGATTGGCCGGCGGCGC

Coding Potentia
Explanation CPC Score
noncoding -1.02168
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0368500.1 7 4186056 A T
Osa07LNT0368500.1 7 4187393 T G
Osa07LNT0368500.1 7 4186057 T A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0368500.1 osa-miR528-3p Translation 5.0 23.62 1 21
Osa07LNT0368500.1 osa-miR1846c-3p Cleavage 4.5 24.983 1 21
Osa07LNT0368500.1 osa-miR2118b Cleavage 4.5 23.929 1 22
Osa07LNT0368500.1 osa-miR2118e Cleavage 4.5 23.929 1 22
Osa07LNT0368500.1 osa-miR2118g Cleavage 4.5 23.929 1 22
Osa07LNT0368500.1 osa-miR2118i Cleavage 4.5 23.929 1 22
Osa07LNT0368500.1 osa-miR2118l Cleavage 5.0 23.929 1 22
Osa07LNT0368500.1 osa-miR2118n Cleavage 4.5 23.929 1 22
Osa07LNT0368500.1 osa-miR2118r Cleavage 4.5 23.929 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0368500.1 7 nan Resistance or Tolerance Insect resistance RG773 CDO59
Osa07LNT0368500.1 7 qSNC-7 Resistance or Tolerance Salinity tolerance C1057 R2401
Osa07LNT0368500.1 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0368500.1 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0368500.1 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0368500.1 7 yd7a Morphological trait Panicle/flower R1440 RG128
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus