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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0368600.2

ATAATTTTGCTGTAGCTTTTCATGCTCCTGGAAGTAAAAACCATCAAATTCTCATTTACTTCTAACAACAAAAGTTTGGTGAAATACAATAAACTACCAGTAAAATTTCCACAACTGTTTTTATATTTACAACACCATCAAAGGTGGAAAAAGGAGGAAGTAAGCTCCAGAGATATCTACAAGATGGAGACGAAGAGATACACCGAGCTCAGAACAGCACACTGTTCTTGCGAAAACCGTTAGATGTATAGCCTTCAGTTCTCAACTTATCTGATATTGGAGAAGATTCAATGGTTCAAGAAGATAATAGGTGTCTCAACTGAAGCAAGTGTTCCTCATTTGTGATGTTAAGCGAAAGGCGCAGATTTGTCAGAAGTGACTCTTGCTCCCATGTCAGTGGTCCCAATGCATAGAAAGCTCTCACTGTTGATTGATATGCTTGTAGCTCCAGCTCATGGACATCCATTTTGAAATCACAGCCATGGACATTGTCACTCTCCTGCCTAAGCATGGATGGACATGAAGACATGGCATCATCAGGGAAGCTGTTCCTGACTCCGACAGATTGTGTGTCAGTGTTCATAGAGTGTTCTGAGAAATTCACACTACAACTAGCCACAGAACACTCGTTTTCTTCTCTAACTTGAAGAGGCATTTGGGATGGAGGACGAACTATGCTGTCTGGTTTTCTCTTTGTTAAGTTGTTCTTGGCAAGATCATTGTATCTTTCACTAGAAGGTCTACAAAAGAGATCTCTGTGGATGTCATTCTTTGCAGACACTTTCAGAGGCTGTGGTTTCCTGGTTTGCCGATGAACTTCATGTGCATCTACTCTCCTTTTCTTGCTTGCTCCTGGAATTGAATCATCTGGTGGCATCCTAGTCAGTTCTAATTTTTTCTTCACATTTCTTGCACTAGAGGAAGGACAGAGATTGATCGCTTTGTGCCTCTTAGTGATGTGATCATTAGCTTCATTGGAGTGATGATCATCTTCCATCACCATTTTTGAGTGATGAAATGTTTGATCAACATGTTGGGTCTGTTTTTCACTCTGCTTTCTGACTTTGTCTATTACAGCTGACTGCTTGCCATGATAGGCATGTGGAAACCTCAAGCAAGATATGTGGAATTCTCTCATTTGCATGCAACCTGTTACCCTGATGACGAAATAGTCATCCTTCAGCACCTTTGCGATCTTCCCAAGCCTCCACGAATTACGATCCAAAACCTCAGTTATGTCACCAAGAACCCATCTGCCTTTTCTCATACCAACTGGCCGATGCGTCCTAACATCATCCTTCTTCACTGCAGGCATCCCTTCAGCAGCAAAGTTTAGATTGCTATCCCTAAAGTTATGTAGCGTTGTACCTTTTAGTTTCATCATCTCTCACTAAGAACCTGACCCTCAGTTTGGTGAAAAACCAAATCAGAAGGCATCATCGAGTTGGAATCACGAACAACAGCAGCTCAAGTCGGAATCACCAACACAAGAAACTCCAAGATGGGATTTTTAACGCGCAATCTAGGCCAAAATGTAAGAGTTGGAGTACAAGAAATCCAAAGAAACCAGCATCAAACCACTCCTCACCTGCAACAAGAAGCCAACCAACGGATAAACTCGCCTCGCCGATCCAAGATTCTCAAAATGAAAACAGTTTTCCCCTCTCCAGATTAAACAAGCAACTCCTAAATCGGGATTAACCCCCAACTCGTCTGTTCCTCCAATCCAATTCACGCAAGAAACAGAAAGAAATAAAGAAGCTAGCAAAAAATTTCGCCACCTCCAAACGCCCTAAAATAGAAACCCAACCCAAAAATTATGCGAAAAAGAAAAAAGAAGATCAGAAATTTGGTGCATCGAAGGTGACCAACCTCGAGAGGAGATGGGAGGATTAATCCGGCGGCCAGGAAGAAATCGGAGCGCCTAATTCCGTGCCTAACCGTAGGAGAAAACGGTGTGCTGGCTTTGCCCTGTGGATTGGCTGTTTCTTTCAGTTCTTGCTTTCCTGTTCCTTGCGTTTTTGTCA

Coding Potentia
Explanation CPC Score
noncoding -1.11512
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0368600.2 7 4194574 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0368600.2 osa-miR5830 Cleavage 5.0 10.771 1 24
Osa07LNT0368600.2 osa-miR5836 Cleavage 5.0 18.302 1 21
Osa07LNT0368600.2 osa-miR395f Translation 4.5 8.423 1 21
Osa07LNT0368600.2 osa-miR164c Translation 5.0 15.566 1 21
Osa07LNT0368600.2 osa-miR169e Cleavage 4.5 14.992 1 21
Osa07LNT0368600.2 osa-miR169f.1 Cleavage 4.5 14.992 1 21
Osa07LNT0368600.2 osa-miR169g Cleavage 4.5 14.992 1 21
Osa07LNT0368600.2 osa-miR169h Cleavage 4.5 14.992 1 21
Osa07LNT0368600.2 osa-miR169i-5p.1 Cleavage 4.5 14.992 1 21
Osa07LNT0368600.2 osa-miR169j Cleavage 4.5 14.992 1 21
Osa07LNT0368600.2 osa-miR169k Cleavage 4.5 14.992 1 21
Osa07LNT0368600.2 osa-miR169l Cleavage 4.5 14.992 1 21
Osa07LNT0368600.2 osa-miR169m Cleavage 4.5 14.992 1 21
Osa07LNT0368600.2 osa-miR169n Cleavage 4.0 14.992 1 21
Osa07LNT0368600.2 osa-miR169o Cleavage 4.0 14.992 1 21
Osa07LNT0368600.2 osa-miR2275a Translation 4.0 12.657 1 22
Osa07LNT0368600.2 osa-miR2275b Translation 4.0 12.657 1 22
Osa07LNT0368600.2 osa-miR5487 Cleavage 4.5 12.035 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0368600.2 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0368600.2 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0368600.2 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0368600.2 7 yd7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0368600.2 7 nan Resistance or Tolerance Insect resistance RG773 CDO59
Osa07LNT0368600.2 7 qSNC-7 Resistance or Tolerance Salinity tolerance C1057 R2401
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus