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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0369700.1

CGTATATTGTGCAGACAATTCCAGTTGCTCTCAAGTGATAATGCTATTTGCAGGTGGAGCATGCTAATTGGCAAACCAAAAGCATCTTTAGTAAGTGGGTCTACCTTGCTTTGGTTCTAGGGCACAAACTACAATGGATTTCACATCTCATCACAAGATAAGAAACAAAGCCAGGAAATTATTGCTCATCTTATCTTTACCTTTTCCTCTATAGCAAACTTGCAATGTGCTTTTCTAATCAATACAACAAAAATGAGACTTAAAAGAAAAAGAAGAATCAACACTACTACAAACATGTGCAAAGTCACTACTGAAAGAAAGGAGCTCTTGCCCATATCCCTTTGCCAAGAACCTTTGATGCTGAATTTTGTGAGATGGAAGCTTGATGTTGCTCTCTTTAAAAACCCAATCAGTAGGATAGCTTTTGTTTTCAAGAAAGCTAAAGTTTTATGCCTAAAATTGTCTTAAATACCAGTGCTTAGAACAGCATAGGCCACCTTCCCCTAGTTACACCAGCATCCTGCAAGAGACCCACCACAAATGCTGAACTCCTGTTTTTCCCTCCCTTTCTTCCAACACAATGATCTAATCCACAGAAGTGCTTCGGAAGCTTCCATCGATCGGGGCGCGTGCTACCTACGCTCGGCCTGGTGATCTTCCTGATTCTCCAGTTCCTCTGTTGTGGATTGGATCTGGTCCATTTGGCACCCTCCTCTTCATGCTGCTGAAAGCATCACCAGCATTGAAATCTTCCAAGCTCCTGTGACTGTGAACTAGTCCTCCATTGATCATCATCCTTCTACCCCCAACACCAAGAACACTACTCCCCGGAGACGGCGGTTTCGCGCTTGTCTCCACCAACAATGACACCAAAATGAGGCCTCCAAATAGGATGGCCAATGTTGTCGCTGATACCCGCCTCGCTGACCTGGCAAACCTGCTCATAATACCCTAATTTCTATATCTTGGGGTATTGTCACCACCACCACCACCCCTCTATGAGCATCTCATAGAGTGGTGCAAGTGAGGAAAGCCCCCCCTCAAATGTGAGGCTTCTTCTCTCTTGTCTCAGCACATTATATTGTTGTGGAGGCAGTGGTATGTGTTTCTTGCTTCTGGTTTTCTTCTCAGCTTCTTTCTTCCTTGAGCTGCTGGCTCTGATGTGCTTTTGAAGGGCCTAGCTAATGAAGAGGCATGGTAGAAATCAAAGGAGGTGAGGCCATGCTTGCTTTTGTCCTTTGCTTTTTGAGTTATGTTGTTTTCCTTCTTTTGTTTCATTTTTCTTTCTCTTAGATCTTGATTGGTAAAAAGAGCCAATTGGAGTTTTAAGATGGCAAACCGAAAATGCTGTCTGATGGACCATCAGGGATTACTTAGTTACCCTTGGAGCAAAACCAAGTTAGAGGATAATTTAGTTTACACAAAAGTGTTTAAGGTAAAGTTTGAGTAAATCTAGGAGGAGGCATGACACATGAGAGATTGCTCTGGTAAAGCAAGGTCCAAAAGCAGATCCTTCAAAGTGTGAAGCACCCTGAAGAAATACACACATCTACCACTTTCAGGTGATATGTCACTGTCCTTATTATTAGATTGTGACTACATGGATCACACTGTTCTCATAAGCCCTACATGGATTACATGATCGTTGCAAGGACATTTTCAGTCTACTGTTGAAAATGTACACTAATTCGACGATTTTTCGCATGCAGTAGAACAAAACTTTTGTTAGGATCTAAACTTGTTCTCTGTGGATTAGAAACATGTTTTGAGGTAGCAACAAACAAAGTTTCCTTGTCTAAAAGCCAGGCTGATGCAGGAGATAAAGACCATAGAACTTCTATATTGTGGAAAGGGCCAAAGGAGTTTGTTATTTTTGAGACAGCCTGACACACTGCTGTACTGAAATCCACTGTTATGCAAGCCAACAAAATTAAAGTGGAACAGGCAGTAGCATTGTTGCCAGAAGGACAGATTCCATTTCTGCATCAGTAAAATACCAAAACTTACTTCACAGTCTTCACCTC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.901223
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0369700.1 osa-miR5530 Cleavage 4.5 12.231 1 21
Osa07LNT0369700.1 osa-miR169f.2 Cleavage 4.0 14.72 1 21
Osa07LNT0369700.1 osa-miR1850.2 Cleavage 5.0 14.62 1 21
Osa07LNT0369700.1 osa-miR2100-3p Cleavage 4.0 18.653 1 22
Osa07LNT0369700.1 osa-miR2919 Cleavage 4.0 7.217 1 19
Osa07LNT0369700.1 osa-miR5338 Cleavage 3.5 20.095 1 21
Osa07LNT0369700.1 osa-miR5492 Cleavage 4.5 10.584 1 21
Osa07LNT0369700.1 osa-miR5501 Translation 4.5 7.171 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0369700.1 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0369700.1 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0369700.1 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0369700.1 7 yd7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0369700.1 7 QHd7 Physiological trait Flowering RZ488 RG477
Osa07LNT0369700.1 7 qah7 Physiological trait Flowering R2401 C1226
Osa07LNT0369700.1 7 nan Resistance or Tolerance Insect resistance RG773 CDO59
Osa07LNT0369700.1 7 nan Physiological trait Flowering R2401 R1440
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus