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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0369800.1

GGGGGAAATAGGACAAATCTTCAGTAATGCACAATCATGAATTCAGACAATCAGATACTGCTGTCTCTTAGAAGGTTTGTTTACATGACAGGAGCAAATCCATCAGCTTATCTGACGAACACAGAGCTAAAAAAGAAGAGTTTTGAAGCATAATTCAGAACTAACAACAGAGCTAGAACACAGGCAAACACCCTTACACCTCATTGAGGAATCACAACACCAGAATGGTCAGGTAAAAGATCTTTTGACCTAGATATCAACTGGGCGAAATATACATCTTGGCATTGAATACACGGAAGATGGGAGTGGTAAATTTGCTGTCATAGGCAAGCTGCGAACAGGACAAGCCGTGCAGTGCGCCGCAGCGTTGATCAGGTGTTACAGCAGGCTGACCATCTTGACGAGGCAGCTGCCTGATCTGGTTCTTGCCTACTGATTTGAATAGTTGGGGGCTCAGCTGCTGCAGCAACAGTTTCGGTCAATCTTTGCTTTATGTCCCTTGCAATGGTAAAGAATACCTGCTCCACGTTCTGATTTGTTTTTGCACTCGTCTCAAAAAATTTCATTCCATACTCATCTGCGAGCTTTTGTCCTTGAGCTGTGGACACCACCCGCTTTGTATCCATATCAACCTTGTTGCCCACCAAAATCTTGTTGACATTATCAGATGCATGTTGTTCTATGTTGCGGATCCAATTTCTAATGTTGTTGAAGGATGACTCGTCTGTAACATCATAAACAAGCAGAATGCCCATAGCACCTCTATAGTAGGCAGTTGTAATTGTCCGGAAACGTTCTTGACCAGCAGTATCCCAAATCTGCAATTTTACACGCTTTCCATCAAGCTCAACTGTCCGAACCTTGAAATCAATGCCAATGGTGGTGATAAAACTTGTAGTGAAAGTGTCATCTGAGAACCTCAGAAGCAAGCAACTCTTTCCTACTCCGCTGTCGCCGATGAGGAGGAGCTTGATGAGGTGGTCGAAGTCGCCGCGCGACCTCGACGGAGCCCCCGCCATGCACGCCGCCGCCGCCGCCCCCTCGCGCTCCTCGCTGCTGCTGCTGCTAGGGCAAGTAGCTCGCTCTCGATCTCGGCTGCGTGTGCGCGTGTTTGGTAGCGAGAGGTGAGAGTAGAAGTGGAGAGAGGAGAGGGGAGAAGAAGAGGAGAGGAGAAGAGACGGAACGGGAGAAGCAAACGAAGCGTCCAGC

Coding Potentia
Explanation CPC Score
noncoding -1.12509
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0369800.1 7 5146102 T A
Osa07LNT0369800.1 7 5146326 T A
Osa07LNT0369800.1 7 5146716 A T
Osa07LNT0369800.1 7 5146745 C T
Osa07LNT0369800.1 7 5148398 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0369800.1 osa-miR5820 Cleavage 3.5 20.685 1 21
Osa07LNT0369800.1 osa-miR816 Cleavage 3.5 22.32 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0369800.1 7 nan Physiological trait Flowering R2401 R1440
Osa07LNT0369800.1 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0369800.1 7 QHd7 Physiological trait Flowering RZ488 RG477
Osa07LNT0369800.1 7 yd7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0369800.1 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0369800.1 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0369800.1 7 qah7 Physiological trait Flowering R2401 C1226
Osa07LNT0369800.1 7 nan Resistance or Tolerance Insect resistance RG773 CDO59
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus