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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0370000.1

GATTCATATCTAGAAACAATGAGAAGATCTAACGTCTCGAATATACTCCCTTTATTTGGCATCCATCCCATCTAATACAAATCAGTTGACAAACAAGCGCAAATCGATTCAGAAATATTGAATGAAATGAGGAAGCAAGTAGCATTTCGACATGGGTGTGCCCTATGAAATACGTAGGGTTTTGGAGACCCCCAACATATCTCTTATATACAAACTTGCCGGGAATGGCTGGTCTGGGCGGCGATTTGCGCTGTCGTGGCCCTTGCCGTTGCTTGGCACGTCATCCGGCCCGGAGCCCAGGGGTGGATTTGGAGCGCGGTCGTTGCGTGCGTTCTCCGCCGTTGGATGGCCATCGTGCGTAGGTGCGTTTGGCGTCCCACGTTTTCCTTTTTCTCGTCCGCACGGAGGAGTCACCGGATTGTGGCCAGGGAGGAGGGTGGCGGCGATGCCGGCGGCGAGGTCAGCAGTGGAGAGGGCGACGCGGACCGAATCGAAGGGGAGTTGAGCGGTTGGCACTAGGGATGAAACTGGTTCGGATAGTTTCCGTCCGTCCGGACCAATTTTCGAATTCGGAAAAATTCGGTCGGAACTATTCAGAATTTCTCGGATTCGGAAACGAATTCGAATTTTTTTCTCGGATATGAAAACGAATTCGGTCGGAAACTATCCGGGAATTTTCATCGGATATCCGGGATAATTTTTAGCAAAAAAAAAAA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.355192
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0370000.1 7 5299510 A G
Osa07LNT0370000.1 7 5299499 T C
Osa07LNT0370000.1 7 5299397 C G
Osa07LNT0370000.1 7 5299398 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0370000.1 osa-miR166e-3p Translation 4.0 21.193 1 21
Osa07LNT0370000.1 osa-miR166g-3p Translation 4.5 21.193 1 21
Osa07LNT0370000.1 osa-miR166h-3p Translation 4.5 21.193 1 21
Osa07LNT0370000.1 osa-miR2118i Cleavage 4.0 21.379 1 22
Osa07LNT0370000.1 osa-miR5161 Cleavage 5.0 9.89 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0370000.1 7 nan Resistance or Tolerance Insect resistance RG773 CDO59
Osa07LNT0370000.1 7 nan Physiological trait Flowering R2401 R1440
Osa07LNT0370000.1 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0370000.1 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0370000.1 7 yd7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0370000.1 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0370000.1 7 QHd7 Physiological trait Flowering RZ488 RG477
Osa07LNT0370000.1 7 qah7 Physiological trait Flowering R2401 C1226
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus