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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0370300.2

TAAAAGTTCTGCAAAGTAAAGTTTATTTCCAATCACTGATACAAACAAACCATAAATGTACACAAGTCACGTAGTGAATTTAGAGGTAAAAGACCATCACGAGTACATACAATTTGTGCACGAAGCACTTAGGAAATTTAGAGACACAACACATCACGTGTATACACAATTGTGCTTAAAGCATTTAGAGAATTTGAAGACAGGAGTTAATTCTGCATGAGTGGAGACGATCAACGCACGAGTTTAGACTAACACTACATGCTCATGCGTTGTCCCCACCCTTGTACGTGTTGCCGCTCCTCTTCTCCCCCTTCTCCTACCTCTTCTTGTGCTCCCTCTCTTGTTCTTCCATCTCTAGTCAAAGCTTGGTCCAGGCCATCCGCTCGTAATCCCTTTGCTCCTCAATAGGTGATTCATAATCTGAGTATGGGTCATCTATCACCGGAGAGTCCCCTGCTCTACGCACTTCATCCTCTATCGGCTATTGCTAGTGGCCGCCCTCCCATCGCCGCCTCTGCGCCGCGGCGATGCGGGAGTGACGCGCAAGCTCAGATTGGAGGCATGGGACTGGCGCGCAAGCACAAACACTTACAAATATTTACCTTTACACAACACTTCGGTGGGTTTGAACGCTTTACGAATTCACGGCATTATCTTATGGTAAGCCCCCAATACGTACCAGAAATCATCGCGTACTTAGTTCATACCACAAGATAGGGCCTGTGAATTCGCAAAGCACACTAACCTATTGAAACTTACCCCAATGATAAACTCCACGAATATGAGTTATATGCT

Coding Potentia
Explanation CPC Score
noncoding -1.33304
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0370300.2 7 5449231 G A
Osa07LNT0370300.2 7 5449173 A G
Osa07LNT0370300.2 7 5449159 T G
Osa07LNT0370300.2 7 5450439 T A
Osa07LNT0370300.2 7 5451239 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0370300.2 osa-miR5802 Cleavage 3.5 5.134 1 24
Osa07LNT0370300.2 osa-miR395x Translation 4.0 16.998 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0370300.2 7 qah7 Physiological trait Flowering R2401 C1226
Osa07LNT0370300.2 7 nan Resistance or Tolerance Insect resistance RG773 CDO59
Osa07LNT0370300.2 7 nan Physiological trait Flowering R2401 R1440
Osa07LNT0370300.2 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0370300.2 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0370300.2 7 yd7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0370300.2 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0370300.2 7 QHd7 Physiological trait Flowering RZ488 RG477
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa07LNT0370300.2 osa-MIR1428f 100.0 109 1 109 1.24e-52 202
Osa07LNT0370300.2 osa-MIR1428g 91.589 107 2 108 1.63e-36 148
Osa07LNT0370300.2 osa-MIR1428d 92.742 124 1 124 6.78e-46 180
Osa07LNT0370300.2 osa-MIR1428e 89.815 108 3 110 9.94e-34 139
Osa07LNT0370300.2 osa-MIR1428b 90.323 124 1 124 6.83e-41 163
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus