Transcript

Sequence

>Osa07LNT0370900.1

AAACAACACGACAAGTACAGATCAATTATGTACTGAGATTACATAGTTTCAAATTACATAATGTTACATACTGACAGGCCTAAGCCTCAGATAAGCATACAAAAGAGAGTTACTGGCCACATGCAAATATTCTTCAATTTTGATCATCTAGGATCAGCTGTGAGCCTGTGCCACAATGGATTGTCTGCATGCCTTTCCTTTTCTGCTAGTGACCTTAACAGGAAGAGGAAGGGAAAACGTAGATGATGAACTCGGCCGTGGAGAGTCTATGACCAGAGGAAGAAACTCGGTGGGTCAGGGCCTCATGGGGGCACCGCAACCATCCTAGGAAGGCGAGGGGGCGGACAATCGGATCGCACAGTCCCGGTAGCGCTGAGGATATGGTTGGTGAGGAGCAGCATCACCGAACCGAGGCCAACACAACCCCTTACCCTCCCCCCGGTCCTCCCTGCGGAGCTCGTCGGCATCTGGCGCCCTTGACCACGGGGGCGGCCGGATCTGGCGACGAGGTGGCAGGAGTGGAGGCGCTAGGGATGGGGAGGGGGAGGGTGCCATAGGATGCGGAGGAGCGGAGGAGACGGCAGCCAACGGCATCGGCGTCCGCGCTCGAACGCGAAAGGAGGAGATGGAAGCCGGCGCCCGGCAGCATCTGTTCTTAGGCGGTTGTCGG

Coding Potentia

Explanation	CPC Score
noncoding	-1.19049

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa07LNT0370900.1	7	5725758	T	G
Osa07LNT0370900.1	7	5725263	C	G
Osa07LNT0370900.1	7	5725363	C	A
Osa07LNT0370900.1	7	5725958	A	C

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa07LNT0370900.1	osa-miR6254	Translation	4.0	20.312	1	21
Osa07LNT0370900.1	osa-miR7694-3p	Translation	4.5	24.785	1	22
Osa07LNT0370900.1	osa-miR812f	Cleavage	4.5	19.235	1	24

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa07LNT0370900.1	7	qah7	Physiological trait	Flowering	R2401	C1226
Osa07LNT0370900.1	7	nan	Resistance or Tolerance	Insect resistance	RG773	CDO59
Osa07LNT0370900.1	7	qHd-7	Physiological trait	Flowering	RM125	RM432
Osa07LNT0370900.1	7	nan	Physiological trait	Flowering	R2401	R1440
Osa07LNT0370900.1	7	gp7a	Morphological trait	Panicle/flower	R1440	RG128
Osa07LNT0370900.1	7	gw7	Morphological trait	Panicle/flower	R1440	RG128
Osa07LNT0370900.1	7	tp7b	Morphological trait	Culm/leaf	R1440	RG128
Osa07LNT0370900.1	7	yd7a	Morphological trait	Panicle/flower	R1440	RG128
Osa07LNT0370900.1	7	dth7.1	Physiological trait	Flowering	RM125	RM336
Osa07LNT0370900.1	7	QHd7	Physiological trait	Flowering	RZ488	RG477

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus