Transcript

Sequence

>Osa07LNT0371200.1

GTTCTTTGAGGAGCACTCAGTATTCATGGCTTCTTTTCTTTCTAAGACAATACAAGAAAAATTCTGGCATCTACACCTGTAGATAGACATAACAGTTACATTACATAAATGCGACAATCTGCCAAATCTTTATCTATTATATACTATAAAAGTCCATTAAACATCCTACAAACGCTCTTAAGCCGCCACGTGGTACTCCTACAAATACTCCTATAACGCCTCGTGGCACTCTAATATATTAAAGAAATTGCTATAAATTGTAAGAATAAAGTAAAACATCTAGCCTTCAGTTTTCATTTAATTCGGCGGGCCTGTTATTTTGATCCATCAGATCAAATCACATGCTAATCTCCATGGCCCCACCCCTAGCCTGTATGTAATCCAGTTTGTGCTTCCGCATCACGTATGCATACTCCCGTCCGCTCCTTCACGCCCTCCAATTTCCTTGGTTCAGCTTCATTCCTCCTTGGCACCATGATGACCGCAGCAGCGTCACATCTTCTTCCTTCCTCACCGACTCGCAAACCATGACCGACAATGGGC

Coding Potentia

Explanation	CPC Score
noncoding	-1.34013

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa07LNT0371200.1	7	5973789	T	C
Osa07LNT0371200.1	7	5974010	C	T
Osa07LNT0371200.1	7	5974513	A	G
Osa07LNT0371200.1	7	5974952	T	A

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa07LNT0371200.1	osa-miR5816	Cleavage	1.5	18.586	1	24
Osa07LNT0371200.1	osa-miR5816	Cleavage	3.0	12.887	1	24
Osa07LNT0371200.1	osa-miR1319b	Cleavage	4.0	10.462	1	24
Osa07LNT0371200.1	osa-miR1861o	Cleavage	5.0	12.031	1	22
Osa07LNT0371200.1	osa-miR1861a	Cleavage	5.0	12.031	1	22

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa07LNT0371200.1	7	dth7.1	Physiological trait	Flowering	RM125	RM336
Osa07LNT0371200.1	7	QHd7	Physiological trait	Flowering	RZ488	RG477
Osa07LNT0371200.1	7	qah7	Physiological trait	Flowering	R2401	C1226
Osa07LNT0371200.1	7	nan	Resistance or Tolerance	Insect resistance	RG773	CDO59
Osa07LNT0371200.1	7	qHd-7	Physiological trait	Flowering	RM125	RM432
Osa07LNT0371200.1	7	nan	Physiological trait	Flowering	R2401	R1440
Osa07LNT0371200.1	7	tp7b	Morphological trait	Culm/leaf	R1440	RG128
Osa07LNT0371200.1	7	gp7a	Morphological trait	Panicle/flower	R1440	RG128
Osa07LNT0371200.1	7	gw7	Morphological trait	Panicle/flower	R1440	RG128
Osa07LNT0371200.1	7	yd7a	Morphological trait	Panicle/flower	R1440	RG128
Osa07LNT0371200.1	7	pms1	Physiological trait	Sterility	nan	nan

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus