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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0371800.1

GGGCGTAAATTGTCCCTTTAGGCAATATACATACATATGAGGTAGTGTAAGAGATACATTACAGAAGGAATTTGGAGAGCAGCAACATTTACAGTGCTCTCCTGTCTAAACAAATCGTTCTCTGCTTCAATTATCTTTAGACATGTGGTCTACATTCCGTCCACTTCAATAATCTTGAGACATGTTGTCTATACTCAGTCCATTACAATGCTCTTCAGTCTTAACAGGTGAAATGGATTGAAGCCATAACTCCTACTTCACCTGCAACAATCAGGCCTCAGGACCAGAGGGGAAGTCACAGTTCCATATCATCTCATGAGTACATGGTGTTTGAATATGTGGCAATGAAGTGGATCATTGCTACAGGCCTAAGGAAGAACCAGCTCCAACAGGGGAAGAACATAAGCACTCCAGAGCCGTTTCTTCAATTCAGGGGTTCCTATTAATGAAAACTGAAAGACAAATCCTTTGTACACAAGCAATTGCATGTTTGAAGGATGATTTGCTTCTTTCAGCAAATTAGGTACTGGTGCCGTCTTCTCCTTCATCTGAGTGGAGGCGGTGGAGAGCCTAGCCTAGGATATGAGCATTTTGTTTGTTACCTCTCTGACCAAGGAGCTCACTTTCTTTTCCCTGGTGTTGATCACCTATTACTATATTCCATTCTTACCCCTTCTCTTATAGCTCATTCTCATAATTTGTAACTCCACCGCAGTCCCTACCAAACAATAAATCACAATTTATCCATCCAAAACAACATTTGATAAGAGAGTTACTATTTTCTAGGACATGGTTGGCTGCAGCTTCAGTTCATTCTCTGGCGACATCCTGTTGGTTGCAGGCTGCCACTGGTACTCTTTGATCCCCACAAGCTGGCGGTGCTAATTAACCCCCAACGGCCACTGTCATTGCTAACAACGTGGCCTCTAGGCGTTAGTCTAAAATTCGTTGGGTGGGTGAGCTAGACCGGGTTCCCCTATTAAAGTAAAATCCCCAACTGGCTTAATCTTGAGCAGAACCATGGAAGCCCAGTAGTCGCAGCTGCACTCCTGTCGTCACGCCGGATCGCAAGTGGAGTTGAAGGCAGCGATGGATCCACGGCTCCGATGGTGGCGGTTGCAGACGGAGTAGGGAACCGGTGGCGGCGAGGAGTTGAGGAGGCAGCGGGGAAGGCACGGCGGTGGTGAAGCGCGAACGCGCGCGAGGGGAACCCGCAGTGGGGGAAAGCGCGGCAGTAGTGAGGCAC

Coding Potentia
Explanation CPC Score
noncoding -1.21162
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0371800.1 7 6695047 T C
Osa07LNT0371800.1 7 6695233 G C
Osa07LNT0371800.1 7 6697083 A C
Osa07LNT0371800.1 7 6697818 C T
Osa07LNT0371800.1 7 6698552 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0371800.1 osa-miR6253 Cleavage 5.0 14.504 1 22
Osa07LNT0371800.1 osa-miR159f Cleavage 5.0 14.048 1 21
Osa07LNT0371800.1 osa-miR169i-5p.2 Translation 3.5 24.023 1 22
Osa07LNT0371800.1 osa-miR535-3p Cleavage 4.5 22.406 1 21
Osa07LNT0371800.1 osa-miR535-3p Translation 4.5 18.552 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0371800.1 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0371800.1 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0371800.1 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0371800.1 7 yd7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0371800.1 7 pms1 Physiological trait Sterility nan nan
Osa07LNT0371800.1 7 dth7.1 Physiological trait Flowering RM125 RM336
Osa07LNT0371800.1 7 QHd7 Physiological trait Flowering RZ488 RG477
Osa07LNT0371800.1 7 qah7 Physiological trait Flowering R2401 C1226
Osa07LNT0371800.1 7 nan Resistance or Tolerance Insect resistance RG773 CDO59
Osa07LNT0371800.1 7 qHd-7 Physiological trait Flowering RM125 RM432
Osa07LNT0371800.1 7 nan Physiological trait Flowering R2401 R1440
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus