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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0372700.2

GTCCGTAGCTATTCTCAATGGTATCTGCAATTATCATCTCCAGGCTAGGAAACGCACGCATGTTTTTTTTCCCAAGCATTTGATCAAACAGAAAATAACTTTAACTGCACATTACAAAGTCCAAACACATGATTAAGCATGTTATCCTGAATGGTTGTCACTAACAACAAAAATTCTAGCACAAAACATGAAAACACTAGCAAGATAATTTCACATCTTTAAATCAATGCCAGGTAGTTTCAGTGTCATCCCACATTCCCACTAGTAAAAATAGAAGAGAACCTCATTTCTCCTTCACTGCTTCTGCGTGATACTGGTCCAATTCAGCATCAAGATCTGCAGCTGATTTTTGTATGCGACTCCGTTCATTTCCACGGGTTTTCCCCTGGCTGCAGCCACCACCGCCCTGACTACCGCTTCCAGGACGACCGCTACCTTGAAATCCTCTTGGCCCACCTCCAATGCCCTGACTGTTTCCAGGGCGACCATTACCTTGATGAAATTGTCCTCTTTGGCCACCTCTCCGTGGTACACTGTTAGGGTAGTTCGGAAAAGGTGGATTGTACAACAAAGGTGCTGTTGGGGGCATTGGGGATGTCTCAGAATTATTTCCGATGAGATCTATCTTCATGGGGTTACCATCAAGTATTACACCATCATATCTCTTAATAGCCTCCAAAGCATCCACTTTTCTTGCAAACACAACTTCTGCCGTTCCCTGTGATTTTCCATCCTTATCATAGTTAACAGAATAGCGTTTGAGCTCACCAATCTCCGAGAAGAGCTCCTGGACGTCGTCGACGGTGACGCCGGGGTCGAGGTTGGAGATGTGCAGCTTCGTCCCGGTCTCCAGAGACCGCGCGGCGGCGGCGGCGGCGGCTGGCGGCGGCCGCGGCCGCGGCACGACCCCCG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.87666
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0372700.2 7 7627744 G A
Osa07LNT0372700.2 7 7628108 C G
Osa07LNT0372700.2 7 7628381 T C
Osa07LNT0372700.2 7 7629741 A C
Osa07LNT0372700.2 7 7630044 G A
Osa07LNT0372700.2 7 7630071 A C
Osa07LNT0372700.2 7 7630666 G A
Osa07LNT0372700.2 7 7630780 T C
Osa07LNT0372700.2 7 7630981 T C
Osa07LNT0372700.2 7 7631604 A T
Osa07LNT0372700.2 7 7633650 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0372700.2 osa-miR395t Cleavage 4.5 10.55 1 21
Osa07LNT0372700.2 osa-miR395a Cleavage 4.5 10.55 1 21
Osa07LNT0372700.2 osa-miR1876 Translation 5.0 16.305 1 24
Osa07LNT0372700.2 osa-miR2118b Cleavage 5.0 24.834 1 22
Osa07LNT0372700.2 osa-miR2118d Cleavage 5.0 24.834 1 22
Osa07LNT0372700.2 osa-miR2118e Cleavage 4.0 24.834 1 22
Osa07LNT0372700.2 osa-miR2118g Cleavage 5.0 24.834 1 22
Osa07LNT0372700.2 osa-miR2118n Cleavage 5.0 24.834 1 22
Osa07LNT0372700.2 osa-miR2118p Cleavage 4.5 24.834 1 22
Osa07LNT0372700.2 osa-miR2118r Cleavage 4.0 24.834 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0372700.2 7 hwd2 Physiological trait Lethality nan nan
Osa07LNT0372700.2 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0372700.2 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0372700.2 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0372700.2 7 yd7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0372700.2 7 dth7.1 Physiological trait Flowering RM125 RM336
Osa07LNT0372700.2 7 qah7 Physiological trait Flowering R2401 C1226
Osa07LNT0372700.2 7 nan Resistance or Tolerance Insect resistance RG773 CDO59
Osa07LNT0372700.2 7 qHd-7 Physiological trait Flowering RM125 RM432
Osa07LNT0372700.2 7 nan Physiological trait Flowering R2401 R1440
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus