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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0372900.1

GAAGTTATAAACATGGGTTGCTTTTATTTAGAGTAAGAATCCAAACAATACAGGACATTGAAATAATAACATCACACCAACAGTTATCTCCACAAAGCTCTATACACACGACTACACAAGGCAAGCCTTAAGGCAAAATTGGAAGTCTTCAACAATCACTTGCACCAAAAATAAAAATCTACAAGGACATAGTTGATGATTGGGGCGTCTAACTGTATAGAGAAATGAACTTGAGGAAAGGATTTTGTAACCGGGTAGCGCCCGACTTATATGGCTGCTGTGCTGCTGGCACTGGGTAGCTATTACCATCATAGCATACTTGGCCTGGCCCAGGGCTGGGCCTAAGTTGCTCACATATCTCAGGAGCTACAGAATTTGAGAACCCTTCGATGAGCGAACAATTCCAAGGATCAGCAGATTTGCTACTGAGGGACACATTTGATAAGCAAATGTTGCTAAAGATATCCCCCTGGATGCCCAGCAACATTCCTGCAGTACCAATGTTTACCCCCACCACATTTTTTATCGTTATGTTGCTAATGACTGGAAGCGCATTCTTGTCATAGTTGTCGTCAGGATGTTCCCCATAGTTTCCAGTGATCCTGATGGCTATTGAGACATTGTCCATGCTCACATCAGCTATGTATATGTTTTTCACATACCCACCGCGCCCTGGGGCAGTCTTGATTCTGATTCCATGCACCGAGTTGATGAAACGAAGGCCCTCAGCTCGAACGTCTGATATACCACCTGACATCTCGCTTCCAAAGGCTATTCCTGCGCTGTTCCTTGTCTGTCCAGTGATGTTGCGGATGCTAATGTTGGAGCTAGGATGGGCAAAAGAGATACCATACTCGTCCCAACCGCTCTTGATGACGACAATGTCATCGCCGTTTCTGATGTAGCAATCTTCGATGCACACATTTGAGGATGAGTCTGGATCAATGCCATCAGTGTTTGGTGAACTGATAGGTGCTAGGATCGTCAGATGCTGGACAAGAACTTGGCTGCAGTATACAGGATGAATATTCCAAAATGGTGCATTCATGAAGGTTAAATTGGAAATAACAACCCTGTCAGAGTACATCAGTTCAAGAAGAGGGGGCCTGGTATAATTTAGTGTGTGATTGTGAAACCAGTTCCACCAAAGTTCACCTTGGCCATCAATGGTGCCATTAGCACCAGTTATTATTACATCAGTAAGATTGGATCCAAAAATAAGACTCTGGTGTCTTTTACCAGGGAGTTCTCTGCCACGCCCATAAGATGGCAGAGGATCAATAACTGGCCAGTCAGATGAATCTTGAGATCCGATTATTACTGCATCGGCGTCAAGTGACACAGTGAGATGACTGATAAGATTAAAACTCCCAGTCAACCACCTTCCAGCAGGCACAAAGAGCTCTGCCCCACCCTTATCTGCAAATGAGCTGAGGTAAAAGATTGCATTCTTAAACGCTTTCGTGTTAAGAGTAACACCATCATTAACAGCACCAAACTCAGTAATTGACACACTGTGTGGCCGATGCACGCTTGCTGTCAAGTCGTTGCAGTACATGGCAGATGAAGTGGCCCATTGAGTCGCAGCAAAAACAGTTGCAAAAACCAAAAGGACTTGAAGTGCAGATGCGGATCGGCTCATCATTTTCTCTAGCAGCGAGTGAAGAAACTGTCAAGTCAGTTCTTCCTCCCTCAAATCGACTCACCAGCAGGCACCACACCAGAACAACAGCCAAGATCGACGACTCTCTACTTCTCCGGGCTCGCCTTCTCGGGCCGCGAACGCAGCGGCGTCGACGGCGACGGCTATGCCGATGGCTTCACTCAACACACTCACTCCCCATCACCTTCTCCGGCTCCAAGCGGCAGCAAAGAGAAGAGTAGGACTGGA

Coding Potentia
Explanation CPC Score
noncoding -1.20809
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0372900.1 7 8079033 C T
Osa07LNT0372900.1 7 8079044 G A
Osa07LNT0372900.1 7 8079134 T C
Osa07LNT0372900.1 7 8079226 T C
Osa07LNT0372900.1 7 8079366 C T
Osa07LNT0372900.1 7 8079403 A G
Osa07LNT0372900.1 7 8080205 A G
Osa07LNT0372900.1 7 8080485 A G
Osa07LNT0372900.1 7 8080925 T C
Osa07LNT0372900.1 7 8081538 G A
Osa07LNT0372900.1 7 8081655 C A
Osa07LNT0372900.1 7 8079878 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0372900.1 osa-miR5832 Translation 4.5 24.96 1 21
Osa07LNT0372900.1 osa-miR1425-3p Translation 5.0 15.39 1 21
Osa07LNT0372900.1 osa-miR1426 Cleavage 4.5 20.791 1 21
Osa07LNT0372900.1 osa-miR2866 Translation 4.0 19.213 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0372900.1 7 dth7.1 Physiological trait Flowering RM125 RM336
Osa07LNT0372900.1 7 qah7 Physiological trait Flowering R2401 C1226
Osa07LNT0372900.1 7 nan Resistance or Tolerance Insect resistance RG773 CDO59
Osa07LNT0372900.1 7 qHd-7 Physiological trait Flowering RM125 RM432
Osa07LNT0372900.1 7 nan Physiological trait Flowering R2401 R1440
Osa07LNT0372900.1 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0372900.1 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0372900.1 7 hwd2 Physiological trait Lethality nan nan
Osa07LNT0372900.1 7 yd7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0372900.1 7 tp7b Morphological trait Culm/leaf R1440 RG128
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus