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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0373200.1

ATTCTGGAAATCCGCGGTTGTCGTCTCCTCTATATTGAGGTCCTTCGTAAACTTAACGAGGTATTTTATATCTCATTTAACCTATATTTTGAGAAACAATAGAATTTTTGCACTAAAATATAGCACATGCCCTATGTATGGCGAGAATGTGTACGCATGCTACGTATCCTCTACACATACTGTACCTATGACCACCAAACGATACTTCTTTGCCTCACGCACATGCATGCACAAGCACACACTGATCCTTAATTCTTCACATGGACGACGCGTGCTTGGAGAGGTAGTCGATGGCGACGGCGGCGTGGACCGCGGCGCCGACGGGGAGTGCGGCCTCGTCGATGACGAAGTGCGGGGAGTGCGTGGTGTGCGCCGCCCGGGCGCTGCTGGTGGTGGCGTTGCCGACGCCGATGGTGAAGAAGGCGCTGGGCATCCGCGCCGCGTAGAACCCGAAGTCCTCGGCGCCCATCAGCTGCGGTGCCACGCGGACGCCGCCGGCGCCCAGCAGCCGCTCCGCCGACGCCCGCGCGTGCGCGTACATCCCCTCGTCGTTCACCACCGCCGGGTACGGCCGCATCGACTCCTCCATGAAGTCCACGCCGCCGCCGCACCGGTTCACCGCCGCCTGCCCTTCCACTATCTCTTTGATCCTCTTCATTAGATATGCTAAACCCTCATCAGTCATGCTCCTCATGGTGCCACCAAACTCCACAGACTGAGGAATAACATTGTAAGCTTCTCCTCCTTTCACAAAGGTGATGGATACCACCGCGCCCTGGAGGGGATCGATTTCGCGGGCGACAATCTGCTGAAGGCTGAGGATGGCATTGGATGCAGCGACAACAGGATCAATGGCGTCATGGGGGAATGCAGCATGGCCACCCTTTCCAGTGATAGTTGCCAAGAACCTGCCTGACGTTGCGGCGAATGGCCCAGGCCTGGCTGCAACCACGCCCACCGGAAGAGCCGGATCGACGTGCATCCCAAACATCGCCGACACGTCGTCGAGGACGCCTTCCTGAAGAACATAGTAGGCACCTGCGCTCCCCTCCTCTGCTGGCTGGAACACCAGCTTTACAGTGCCCTTGAGTTCGTTCTTGCGTTTCTGAAGTAGCTTGGCTGCTCCCAGAAGCATTGCAGTGTGAGCATCATGGCCGCAAGCATGCATTTTCCCGTTTTCCTGGCTCTTGTGTTCCCAATCTACCAATTCCTGCACGGGGAGCGCGTCCATGTCCGCCCGGAGCGCGACGACGGGGCCATCGCCGCCGCCGCCGCCGGCGATCGTGGCGACGACGCCGGTGCGCGCGACGGGCCACTGGTAGGGGACGCCGATGGCGTCGAGCTCGGCGCGGACGAGCTCGCTGGTGCGGACCTCCTCGAACGCCAGCTCGGGGTGCCGGTGGATCCGCCGCCGCACGCCGCGCAGCCACTCGGCCATCCCCGGCTCGCGCGCCGCCGCCAGGAGGTCGTCATCCCCCGCCGCCGCCGCCCACGCCGACGCCGAGGCGAGAGCGAGGCAGAAGGTCAAGACGAGGAGGAGGGGGATGAGGCGAGTGGTGGAGGAGGAAGAAGCCGCCATGGCGGCGGAGGAGGATGACGTCAGCGCGCGCGCGCTTCGTTCGCGTGGTTGGTTAGGCGTGTGGTGCAGTGTGTGAGAGGAGTGAGGGCGGCGCTCGCTTGCTTTGCTTTCGTCTCGG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.603357
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0373200.1 7 8334989 T C
Osa07LNT0373200.1 7 8335436 G T
Osa07LNT0373200.1 7 8335771 T C
Osa07LNT0373200.1 7 8335846 T C
Osa07LNT0373200.1 7 8336195 C T
Osa07LNT0373200.1 7 8337108 T G
Osa07LNT0373200.1 7 8336982 G T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0373200.1 osa-miR414 Translation 3.5 24.076 1 21
Osa07LNT0373200.1 osa-miR815a Cleavage 3.0 8.993 1 21
Osa07LNT0373200.1 osa-miR815b Cleavage 3.0 8.993 1 21
Osa07LNT0373200.1 osa-miR815c Cleavage 3.0 8.993 1 21
Osa07LNT0373200.1 osa-miR1859 Cleavage 4.5 20.789 1 22
Osa07LNT0373200.1 osa-miR2091-3p Translation 5.0 21.814 1 22
Osa07LNT0373200.1 osa-miR2104 Cleavage 3.5 21.3 1 22
Osa07LNT0373200.1 osa-miR5076 Cleavage 4.0 19.717 1 22
Osa07LNT0373200.1 osa-miR5489 Cleavage 4.0 15.17 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0373200.1 7 hwd2 Physiological trait Lethality nan nan
Osa07LNT0373200.1 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0373200.1 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0373200.1 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0373200.1 7 yd7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0373200.1 7 dth7.1 Physiological trait Flowering RM125 RM336
Osa07LNT0373200.1 7 qah7 Physiological trait Flowering R2401 C1226
Osa07LNT0373200.1 7 nan Resistance or Tolerance Insect resistance RG773 CDO59
Osa07LNT0373200.1 7 qHd-7 Physiological trait Flowering RM125 RM432
Osa07LNT0373200.1 7 nan Physiological trait Flowering R2401 R1440
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus