\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0374000.1

GCAGAATAACGTTTGCATTGTTGACAAAATTTGGATATTCTTCAGCCCATGTTGTCATCAGACAAATGAACTACCAACAAGAGCATAGTTACAAGACCAGAAATACAGAAAAAAAAAAGATGGTGGAATACAAGGTTTAAGCTTGCATGTTCATCAGATAGTGTAAGCAGAGATAATAACTTGGCTAGCATATACAAAGGGCTCACTCTTGAAAGAATTTCTGCTCCAGAAAATTCTCTATCCCTATCACCTTTTACTCCTGGTCATCGTCGTCGTCATCATCGTCTCCCTTCTTAAGGCGGGTAGTTCCACCCTCTTTGCATATAGGTATTTTCATGTGTCCAAAAGGAGTATTGACATCAATGTGCCCCTTTATGGTGTAACCAGTTCCCTTTCCCCTTATCATATCCCACATAGCAGAGCCAAAATCCTTGGGCCTGAAGCTGATTGGTAAATTCATGGTTGTTACCTCCTGCTTCTTAATATTTGTAGTTTCTTTCATCTCAGCAGAAGCAATGCTCACATTAGAGAGCCACACTTCATAATCCATAGAATTCAGTCCCAGGTCAAAGTCATTTTTGTTGTCAAGATTCAAATGGAGTGTTGCGGTTGCTTCCTCAAAGGAGAACTGCTCAAACTTGATCTTACTCACATTAACGTCTGGTCTGTAAGGCACTGGGATCTCACCATTTTTCTCCAGAGGTATAGAAATCCTTCCGATGACCGGGATATCTATATGAAGCACAACTCTGATCTTGTATGGAATGATACTCCCAGGCTTGATGTCCCCATATGTACTCTTGATGTCATCATAAATAAGTAGCAGAGGGATTTTCACTGTCTCTGAACCATGAGCATGTATGGTTCCAGAATCAGGGATTGTCCCAGACATGAGCTTTCTCTCTTCGCTTTCGATCAAGTATTCGATGTCGACGAGAGGGATCGGCACGGGGTTTGGGTTGGTGATGAGAACATCAGCAATCAGCTCTACCTTCTCAAGGCTGATGTGAGGTATGTGGATCCCGGTAACATCAGCAGTAGGCTTTCCAAAGCTTACTGCATCTTCAATCTTTTCACCAATGTCTTGAATGAAATCCTTTACCTTGTCGAAGAAACCTCCCCCCTCTCCATCATTATTGTCGTCATGGTCCTTGTCAGCTTTCCTTTCGGTCACTTTTGGGCTATCCGAAGATGACATGCTGCTAGGGTATCGACGACGACGATCGAAGCGAAACGGCCGCGATCGAGCAGAGCAGAGGAGGGGAGAGGAGATGGGCTTCGCGTCCGTCGGTGGAATTGGGATGGAGAGCGGAAGCGGAACGCCATTAGCGGCTTAAG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.804174
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0374000.1 7 10057779 A G
Osa07LNT0374000.1 7 10057966 G T
Osa07LNT0374000.1 7 10059181 T C
Osa07LNT0374000.1 7 10060320 T C
Osa07LNT0374000.1 7 10060471 C A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0374000.1 osa-miR5800 Cleavage 4.5 20.023 1 21
Osa07LNT0374000.1 osa-miR5806 Translation 5.0 18.997 1 21
Osa07LNT0374000.1 osa-miR7693-5p Cleavage 4.0 24.945 1 24
Osa07LNT0374000.1 osa-miR2926 Translation 4.0 23.346 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0374000.1 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0374000.1 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0374000.1 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0374000.1 7 yd7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0374000.1 7 dth7.1 Physiological trait Flowering RM125 RM336
Osa07LNT0374000.1 7 Hd4 Physiological trait Flowering nan nan
Osa07LNT0374000.1 7 qah7 Physiological trait Flowering R2401 C1226
Osa07LNT0374000.1 7 nan Resistance or Tolerance Insect resistance RG773 CDO59
Osa07LNT0374000.1 7 qHd-7 Physiological trait Flowering RM125 RM432
Osa07LNT0374000.1 7 qSSP7 Morphological trait Panicle/flower nan nan
Osa07LNT0374000.1 7 nan Physiological trait Flowering R2401 R1440
Osa07LNT0374000.1 7 hwd2 Physiological trait Lethality nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus