>Osa07LNT0374600.2

TTTTTGCATAACCCATGAAAGCAGCATGCTATGCTGGCTGCTTTCCGAAGTCGGAATTCAATCGAGGTGGAATGTGTACACGGGCAAGGGGTAATCTTCATTTTACACATGGGTTACAAATCCATAGGAAAAAAGGAGGTCCAACTGAGTGATTGCAATAATCATATAGCTAGAGGATGGAGAGGGATATTTTTTTTTTTTTGGGGCAATCGAGTGAACTGCGTTGCAAACATGAATATACATCTACAGGGCGTTGCAGCGACGAACAGCAGCACTACTAATGTCAATGGAGGATCACAGATTCACAGGCAAAATTTGAAGGTCGAAATACCCAAAGCTATCTGTGGTTGAAGCCTTAAAAAAGTGGATTGAAACCACAAGTTTGAGATGTGCAACAGTATGCATGTCCGCATGTTATAGCCCGATTTAATACTTTTAGCTTGGAAGTGCAGAAATTGGCAACTGGTTGTGAAATGATCCATTTGATAGTTCATGTGCCTCCAAAGGACTTTTCTTCGAGCGCTCCAAGGATGTTGCTTCAAAAATGCCAAATCCTAAAATCACTGAACAAAGCAGAAAGCCCAAAAGGGAGAAATCCATTTTGTACAGTATCTCCAAAACAATGATGCAACCTGTTGAAACCATTAGATGTCTTGGAGAAGAGAAGACCAGATGCAATTTTTCCTCGGCAACATTGTCAACATAGAATATAAGCACCATTCCAAACAAAACAGTACTCAAGTACGCCCAGCTTGGAAACTGCAGTTTAACTATGCTGTCAGATGCCGAGCCCAGGATTGTATCCCACATTGCAAAAGGAAAAAGAAAACATGTAGCAGAAGCAACATTAATTGCATGAAGTCGCCTTTTAAGTTGATTCTTAAGGGACACCCGCCGAGCTAATACTCTCCTCAAAGCAGATAAAATTCCAGCAGTAAGTGGGACCACCATTTCTTTCATTCCAATAACTTGTGTTCCCTTCTCCAGTGATTCACTTCCAAAGCTATATAGTGGTGAATGTGTTCTTGTAGCCCATCCATTTCCTAAGAGATAGTATGCTACCAGCATAGCAGCGAGCCCACCAATCTTCTTCCATATGTTAACTTTCCTTCCATATAAAGCAGCTGAGAGAACTCCAAGAACAGCACCTGCGTACTCCGCCAGCAGAGCGACAAGTGGTCCGCAAGCAAGAAGTCCTTTACCCCACAGCACGAAGTACAATGCCAGAATTCCTCCATTGATAACTGTCGGAACAACCTGTGTGTTGGGCAGAGGCCGGCCTTTCCAAGGCTTCTGCAAAGCCAGGAAGATGACTGAAGCAGGTACAAGGCAACTGAAGATGAAGCCGACCATTGAATCCCCACTACTAGACAGGTAGTTATACAGGGAGTACACAGACCAAATTCTAGCAAAGTTTCCCAAAATATGAATAACTTGCAACGGTGTTGACCTCGCCGTGGGCACCGAGCGGGAGGTGGAGGCACCGCCGCCGCCTTCCGGTGCGGCAGAGGCGGAGGGCCTCGGCGACATCATCTTCGAAGGCCCCGCCTCGCCGCTGCCCCCTGGTCCGACTCCCCGGATCAGCTAGCTGCTGGCCCCTGGTCCGACTCGCCGGATCAGACCACGGCGCCGACGCCCGACGCGTGGAGCGGCGGTAATTAAGCCTTCCCGCTGTGATGCTGCTCGACTGCGCGAGGCGGCGGCGGCGGCGGCGGCGGGCGGAGGGGCGGCGCTGGGCTTCTCCGATCTGGATCGATTTTTCTTTTCTTTTCTTCCCCGCTGTTTT

Explanation	CPC Score
noncoding (weak)	-0.975531

Transcript ID	Chromosome	Locus	Ref	Alt
Osa07LNT0374600.2	7	10817950	A	T
Osa07LNT0374600.2	7	10817529	T	A
Osa07LNT0374600.2	7	10818231	A	T
Osa07LNT0374600.2	7	10819836	A	G
Osa07LNT0374600.2	7	10820105	T	A
Osa07LNT0374600.2	7	10820356	G	T
Osa07LNT0374600.2	7	10820488	G	A
Osa07LNT0374600.2	7	10820534	A	C
Osa07LNT0374600.2	7	10821882	T	A
Osa07LNT0374600.2	7	10821893	T	C
Osa07LNT0374600.2	7	10822529	A	G
Osa07LNT0374600.2	7	10822555	T	A
Osa07LNT0374600.2	7	10822700	C	G
Osa07LNT0374600.2	7	10823856	G	C
Osa07LNT0374600.2	7	10824491	A	G
Osa07LNT0374600.2	7	10824878	A	G
Osa07LNT0374600.2	7	10819821	C	T
Osa07LNT0374600.2	7	10818925	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa07LNT0374600.2	osa-miR5827	Cleavage	4.0	13.346	1	21
Osa07LNT0374600.2	osa-miR166a-5p	Cleavage	5.0	14.511	1	21
Osa07LNT0374600.2	osa-miR166d-5p	Cleavage	5.0	14.511	1	21
Osa07LNT0374600.2	osa-miR166e-5p	Cleavage	5.0	14.511	1	21
Osa07LNT0374600.2	osa-miR395u	Cleavage	5.0	19.097	1	21
Osa07LNT0374600.2	osa-miR1866-5p	Cleavage	4.5	11.175	1	24
Osa07LNT0374600.2	osa-miR5499	Cleavage	4.5	17.672	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa07LNT0374600.2	7	nan	Resistance or Tolerance	Insect resistance	RG773	CDO59
Osa07LNT0374600.2	7	qHd-7	Physiological trait	Flowering	RM125	RM432
Osa07LNT0374600.2	7	qSSP7	Morphological trait	Panicle/flower	nan	nan
Osa07LNT0374600.2	7	nan	Physiological trait	Flowering	R2401	R1440
Osa07LNT0374600.2	7	gp7a	Morphological trait	Panicle/flower	R1440	RG128
Osa07LNT0374600.2	7	hwd2	Physiological trait	Lethality	nan	nan
Osa07LNT0374600.2	7	dth7.1	Physiological trait	Flowering	RM125	RM336
Osa07LNT0374600.2	7	gw7	Morphological trait	Panicle/flower	R1440	RG128
Osa07LNT0374600.2	7	tp7b	Morphological trait	Culm/leaf	R1440	RG128
Osa07LNT0374600.2	7	yd7a	Morphological trait	Panicle/flower	R1440	RG128
Osa07LNT0374600.2	7	Hd4	Physiological trait	Flowering	nan	nan
Osa07LNT0374600.2	7	qah7	Physiological trait	Flowering	R2401	C1226

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus