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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0374800.1

CAGTGCACATGATAAATATCACCAAATGTTAAAGTGTCAACAAATAGTGTTGGTCCAAATATGGGAGCCAAGAGAGCAGTGAGTAGTTGACAGCTAGTGTTGTGACCACACTACAGAACTGAGAATCACACAGCAGAGCATGTTAGTGGAGAACTCCTACAAAATGTGGACATTATGAATAAAAACTAAGAAAAAAAACATATCCTCCGGATTAGTCGTTATCTCACATATGAGGCTCCCCAACTGTTCATACTTGCATTTGTGTTCATGAGCTCGTCCATCTACAAATTGCAAAGGCTAAAGGCAGATAGTTGCAAAATAAGAAATAATAGATACATTAGGTGTGGTATGAAGTATTACTATTTATTTTACTGACATATACATATATAAAAAGGATGTAGATTATCACCTTCAGTACAAAACATATATGACCAAATATTACCAGGCATTTGCACATTTCTAAGAATGTACCTTTACCATGCTAGACAACAATTTGGGCAAGCTGCTGCCTATATATATGTATATGATACATTACATATATGATATATCCATCCTGTTATAGCTTATAAGGTAATGGGCATGCTAAACCCAAATGTTATGGCTTGTAGCCAGCAGTCCGATAAAAGAACTCATAGCAGTGTAGCACAGTAGGACTGAATGCCCTGATAACAGCAAGAGTAAACTGTTGGCAAGACATTTACAGATTCATGTCCCTCATGACCTCAATTCAGAAAATGGAAAGAAAAGCTATCTATTGAAACAATGAAGTCACCTAACTAAGCTTAACTTTTTGTATATCTACAAATATCACCTTTTGCCAATATAATTATTACACATTGGGAACCAATACATATACGCAGCACCACGTAATATTCATAAAGAATGAAATTAACAGTGAATTTTAAATTAGAACAGAGTTGACTTCCATTTCGTAAGTAAACTATCCTATATCCAACAAAAAGAATAGTGTCCCACATTCCATAGATACATATTTCATAGGAACATAGGATGATATATACTTGCATACATTCTAATATTTCTTAAAATATAATGGTCTGCAATGTTTTTTGTGAGATTCAGATATAATACAATCCGACTCAACACATCAGTAATAGCAGTGCTAAGGCTCCTTACATGCTGCTGAACCTCACATAGATAAAAATAGGCAAAACTGAAGGTAGAAACAATGGATTGTCATGTGTGACAGCAATAATTGTAAATCATTAATGCTTTCTAAAAGTCTAGGCCTGTAGATTGTACCGATCAGATGAGACCTTTTTTCATGAAGGCACCTAAATTGTAGTGCTAAAAATGCTTTTTCTTTGGGAATGTATTTCAAACCACCCGCAGACCTAGATGCTACCTAGCTGGCTATCCCAAAAGCTAAATGTAAAGGTTATTCTTCAATTTTAGAAGGCACACTGAATTATATGAACTCAAGCAGTTTGAATTATTTTTGGCATACCAACCCTCTAGATGACTCAGAGGAGACGATGATGCGAGCATAAACAACAGATGTACACACTACAGCTGACACGAAAAAAAAAATGGAGAGGTACTATGAGATCATAAGAAAGCCTGGATAGTAGATGATTTACCCATATTTTTCATAGTGTTGCTTTTACAGTGTTAATTAATGATCAAAAGTCGTGCCCCAAATTCCTCCAGGAGGGATCGATGGTTTGATTCCTGGGATTCTTGGTAACCTCGACTAAAGAAAAGAATGAGGAGCAGTCAGTGAAAATCTTGCCCTGTCAGCTGTGACTCATTGTTCTTTATAAGCCAGATGCCTTCCATCAGAAAGTTGAATTGTTTTGGCACTTGGGGGACCTATGTAGAGTTTCTTTGGCAGTTCTACTGGGGTATCATCAACACTCCCTACACCTAATACGATGAGCGTGACGAACGCGACGGCGGCGGCGACGACCTAGCACCTGACGGGGTCGCGGTCCTCGGCGAGGTACTCGTTCATGAAGCTAAGGCGCTCCCTCACGGCCACGGCGGGGCCCCTGAGCCGCCGTGCGAGCTCGCTGTCCTCGGCGCCAGTGAAGCTCTGAGCGGCCAGATCCACCGGGGGGAGACGAAGCGCCGTATCGACGGCCTGCTAGCGGATCTGGCACTACACAAAGCAGGGTGGAGAAGATGGTGGTGGTGGCTCACGACCCTTTCGTCCGGGCGGCCAGAATCGCCTGTAGAGAGGAGGGGGTCACCGGATTCGACGCCCCTGGTCTCCTCGCTGGCAGATGAAGTGGCCTGACTGGGGAGAGAGGCGGGGGCGGTGCAGCGGCGGTGAGAGGAGGGTGAGGACGCGATGCGCGTGAGGAGAGGAGGGCGGGCGAGGGAGGAGGGCGAGGCGACGCGGGCGAGAAGA

Coding Potentia
Explanation CPC Score
noncoding -1.30341
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0374800.1 osa-miR6252 Translation 5.0 10.208 1 23
Osa07LNT0374800.1 osa-miR399e Cleavage 5.0 22.92 1 21
Osa07LNT0374800.1 osa-miR399f Cleavage 5.0 22.92 1 21
Osa07LNT0374800.1 osa-miR399g Cleavage 5.0 22.92 1 21
Osa07LNT0374800.1 osa-miR399k Cleavage 4.5 22.92 1 21
Osa07LNT0374800.1 osa-miR172b Cleavage 5.0 13.471 1 21
Osa07LNT0374800.1 osa-miR814a Translation 4.5 10.813 1 22
Osa07LNT0374800.1 osa-miR814b Translation 4.5 10.813 1 22
Osa07LNT0374800.1 osa-miR814c Translation 4.5 10.813 1 22
Osa07LNT0374800.1 osa-miR1854-5p Cleavage 4.5 7.778 1 21
Osa07LNT0374800.1 osa-miR2100-5p Cleavage 5.0 17.486 1 22
Osa07LNT0374800.1 osa-miR2864.2 Cleavage 4.0 13.297 1 21
Osa07LNT0374800.1 osa-miR2930 Translation 3.5 12.552 1 22
Osa07LNT0374800.1 osa-miR2930 Cleavage 4.5 14.46 1 22
Osa07LNT0374800.1 osa-miR2932 Translation 4.5 14.947 1 19
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0374800.1 7 hwd2 Physiological trait Lethality nan nan
Osa07LNT0374800.1 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0374800.1 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0374800.1 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0374800.1 7 yd7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0374800.1 7 dth7.1 Physiological trait Flowering RM125 RM336
Osa07LNT0374800.1 7 Hd4 Physiological trait Flowering nan nan
Osa07LNT0374800.1 7 qah7 Physiological trait Flowering R2401 C1226
Osa07LNT0374800.1 7 nan Resistance or Tolerance Insect resistance RG773 CDO59
Osa07LNT0374800.1 7 qHd-7 Physiological trait Flowering RM125 RM432
Osa07LNT0374800.1 7 qSSP7 Morphological trait Panicle/flower nan nan
Osa07LNT0374800.1 7 nan Physiological trait Flowering R2401 R1440
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus