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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0034300.2

GTATATATATGGACTGGAACAGAAACAACCAATGCAATTTGCTCCTCATCATTGCCCTCATTTCTAGAATAACATGGATTTGTTGTCTTGAAGAGATCATTTCCTAGAAAGACAAGCATATCCTTTTCGCTAACGAGCGAAGATGCATGTATTAGTATTTTCCGTAGGTAAAGGACAAGGGTGCACTACAGTGTACAAATGTCTTTGATGTGGACTAAGCGAATGGCGTGCCACGAGCTCAACAGGTTCAGAGATGACAGTGGCAGGCAAGGCAGCAACCTCTGCTGCGGCGCAACGGACCGACATGCGTAGACCCACGAGCGCCGCTGGCAGCCCACGGTTCTATTTGGGCTGAAACCGTATCGTATGTAGCGCGACACATGAGCCAGGATGGAATGTCACTTTGACCGGTGTGGTAGATGTAGTACACATATACAAGTATACAACAGCGCAGAAGAGGCGGAGACAGAAACATACACAGCGACAGAGACAGAGACGGAAACGGCGGTGAGGCTTGCCATCGATTGGTTGGTGACTCGATGATCAGTGCAGCATGTGCGCCTCGTCGGGGGTGAGCGGCTCCAGCTCGCAGGCGCCGATGCCCTCGCCGGGCAGGGCGGGGAAGCCCTTGCGCGCGCACGCCTCCTCGCAGCTCCGCACGCACGCCGTCTCCCTGCACTTGCCCGAGCACTGCGCCTCGATGCTCGGGATCCGCGTCCGCATGCACAGCTTCACGCACTCGCAGATGCAGTTCTGCCCCGCCTCCGCCTCCGGGAGCACCATCGCGGCCGCCACCACCGCGCACGCCAGCGCCACCGATGCAGCCCGTCTCGCCATCTCTAGCTTGCTGGTGGTGATCGATCAACCGGCCGGGCAACGTGCTGCCGGTTAATTAATTTGGCCCAAGGCTATGCAAGTG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.982497
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0034300.2 1 29475258 T G
Osa01LNT0034300.2 1 29475870 C G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0034300.2 osa-miR1429-5p Cleavage 4.5 19.401 1 21
Osa01LNT0034300.2 osa-miR169r-3p Cleavage 5.0 19.157 1 21
Osa01LNT0034300.2 osa-miR1848 Translation 4.5 23.643 1 21
Osa01LNT0034300.2 osa-miR1876 Translation 5.0 24.014 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0034300.2 1 An10 Morphological trait Panicle/flower nan nan
Osa01LNT0034300.2 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0034300.2 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0034300.2 1 qHUS-1-2 Others Others RM246 RG101
Osa01LNT0034300.2 1 qLRC-1 Resistance or Tolerance Drought tolerance RM237 RM302
Osa01LNT0034300.2 1 yld1.1 Physiological trait Source activity RM5 RG462
Osa01LNT0034300.2 1 qCC-1 Physiological trait Source activity C122 R1012
Osa01LNT0034300.2 1 nan Morphological trait Root RM3475 RM3494
Osa01LNT0034300.2 1 nan Physiological trait Source activity RG532 RM472
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus