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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0375900.2

CATTGACATCCACGTTCAATTAATCGATTTGACAACAATCTAATGTGAATTACAATAGCAATGCCAATCTCATAGACATCTACAACTGAGATGAAATTTGAATATTACTTCTTAAGGTTAGATAACCAAGGAGGTAGGGAAACGAGAAAAGAGTTGACGAATGGCATTGCAGGCAGTCCGACAACACCTCAAATAATATGAAGATGAGCCAGTTGACTTGCAAATCCTGCTTCGGTGTCACTCTTCACCTACTAGACAGCACCAATTGATTGAGAATCTACTGCCTTGTCTATCCCAATGCTTGTCATTGTCCTGAAATGAATGCACAGAGTGACCTTAGGTGGGTAAAATTGCTGTGGCTTATTCCATGATAATTAAGTTGGGCCTGTTAATTTATGATTTAACTAAGAAAAAGGAACGCATGCCAACTTGAGAGAAAGAAATGGCTCCCTGGCTTTGCAGTGAGTAGAATGTCTTTGAGGTGATGCCTATGATGGCTTGAAATGGAGCCGAGCTGGATTGGTTCAGTACTGGAACAGACATTGCAATTTTGGAATGACTTCTTGGAACATGGCTCCAATTCCATATGATTTTAGTTGTGTTGTACTGGGTGGCTCATGGAAGCAATCCTCAAGGAAAGGAATTGCATCATATAGATAAAACAAGAATTTTATCTCCACTTGGTTCATGGAGAGGCAGCTAGCATGTAAGTCTTGCCCGGGTCCTTCTTCACCCAACTTCTTCACTAACCAGTGGAGGGATGAGGAGGGCAGCGCGGCCCCTGGCCATCGTCGCACCGGAGCAGCTGCCATGGGTGAGGTGGCGCTGGATCTGGATGCCCCCGGACTCATCGCTGGCAGTCTGGTGGCCCCATTGCTCCGGCGAGCCAAAGGTAGAGGATCCATGTCCAGGATGTTGTGGAGGGAGGGCTAGAGCTGGAGCAGCGGGAGGAGGGGGCACGCCGCCATGCCGCCACGGAGAGGGAAGAGAAGGGGCGCGTGCGTCGGT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.872052
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0375900.2 osa-miR5530 Translation 5.0 14.5 1 21
Osa07LNT0375900.2 osa-miR171i-3p Cleavage 5.0 17.859 1 21
Osa07LNT0375900.2 osa-miR1431 Cleavage 4.5 17.504 1 21
Osa07LNT0375900.2 osa-miR1428e-5p Cleavage 5.0 13.805 1 22
Osa07LNT0375900.2 osa-miR1882a Translation 4.5 16.321 1 24
Osa07LNT0375900.2 osa-miR1882b Translation 4.5 16.321 1 24
Osa07LNT0375900.2 osa-miR1882c Translation 4.5 16.321 1 24
Osa07LNT0375900.2 osa-miR1882d Translation 4.5 16.321 1 24
Osa07LNT0375900.2 osa-miR1882e-5p Translation 4.5 16.321 1 24
Osa07LNT0375900.2 osa-miR1882f Translation 4.5 16.321 1 24
Osa07LNT0375900.2 osa-miR1882g Translation 4.5 16.321 1 24
Osa07LNT0375900.2 osa-miR1882h Translation 4.5 16.321 1 24
Osa07LNT0375900.2 osa-miR1428f-5p Cleavage 5.0 13.805 1 22
Osa07LNT0375900.2 osa-miR1428g-5p Cleavage 5.0 13.805 1 22
Osa07LNT0375900.2 osa-miR2100-5p Cleavage 4.0 15.541 1 22
Osa07LNT0375900.2 osa-miR2103 Cleavage 3.5 19.227 1 22
Osa07LNT0375900.2 osa-miR2930 Cleavage 3.5 22.373 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0375900.2 7 nan Resistance or Tolerance Insect resistance RG773 CDO59
Osa07LNT0375900.2 7 rn7a Resistance or Tolerance Drought tolerance C39 RM214
Osa07LNT0375900.2 7 qHd-7 Physiological trait Flowering RM125 RM432
Osa07LNT0375900.2 7 nan Physiological trait Flowering R2401 R1440
Osa07LNT0375900.2 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0375900.2 7 hwd2 Physiological trait Lethality nan nan
Osa07LNT0375900.2 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0375900.2 7 yd7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0375900.2 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0375900.2 7 dth7.1 Physiological trait Flowering RM125 RM336
Osa07LNT0375900.2 7 qah7 Physiological trait Flowering R2401 C1226
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus