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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0002200.1

GCTTGTAAAGAATGATAGACCCAGAAAAAGAAACCTTAGATGATATCTCCTAAAATTCCAAACTCTTAGAGTCTAGTTGCTTCTACTTTCGCCTATGCTCCAGCTTCCTCCTTAATCTCTTGGCTAGGATTGAGGCCGGCGTTGAGGCTTTGTGGCGGAAGATTGTTGCATTACGCTTGCACCATACTTCCCAAGATACTAGGATCACCGGAGTTCGAAATGGTAGACGGGGTTATTAGGGGACTCAAGCACTAGGTTCCACCAGTGTTTGACTGAGTAACGGTCATCCCACTTATCCAATTGTATGTCAGTGTGGCCCTATATTTCGCCAGTAGATGATCCGCATACTCGTCGGCCATATAGCATAACGGGCAAACCTTCTGATTTTGCCACCCTCTTCGTTCCAATCTGTCCGTCGTCCACACTGTATTTTGAATGACGAGTCATGAGAATAACTTGCACTTTCGGAGGCGCCAACAATTTCCATATTGACTAGGTGAAACCTGGATTCCTCCACGGTTCCTCTGAAGAAACGAAGAAGCAGCGGGCACCTCTACTCAGCCTTCGAACTTTTGATGAGTTCATCTGCTCGATCTATGCCTCGCCCAACGCAGAAAGTACAGGACAGGATGCCCATCTCCCCGGCTCCCCGTTGCTTGTGTTTGTAATCCATCCCCAATCCGCCGCCCTAACCAGTCACCACCGCCACCAACGCAGCGGAGGAGAACACTAGCGTTGTTCGGCGACTCCCTCAATGCCTACGGCCGAGCAGCTGGCGTTTACTGCTGCGGCTCACGAAGCGAGACGGCAGCGGCCGCAATCCTGCACGGTTGCACCGCCGCCGACGGCGACGCCGCGGCGGCGCCGGGGAGAAGGGAACAACCGAACAAGGGC

Coding Potentia
Explanation CPC Score
noncoding -1.35843
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0002200.1 1 2046455 G A
Osa01LNT0002200.1 1 2046673 T C
Osa01LNT0002200.1 1 2047054 G A
Osa01LNT0002200.1 1 2047318 T C
Osa01LNT0002200.1 1 2048356 A G
Osa01LNT0002200.1 1 2049134 C T
Osa01LNT0002200.1 1 2049250 G A
Osa01LNT0002200.1 1 2049635 G A
Osa01LNT0002200.1 1 2049751 G A
Osa01LNT0002200.1 1 2050016 A G
Osa01LNT0002200.1 1 2052775 G A
Osa01LNT0002200.1 1 2047051 C A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0002200.1 osa-miR160f-3p Cleavage 5.0 24.349 1 21
Osa01LNT0002200.1 osa-miR1423-5p Translation 5.0 18.009 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0002200.1 1 gp1a Morphological trait Panicle/flower RM1 R753
Osa01LNT0002200.1 1 nan Physiological trait Source activity RG532 RG472
Osa01LNT0002200.1 1 qFLL-1 Morphological trait Culm/leaf RZ543 RG532
Osa01LNT0002200.1 1 qFLP-1 Morphological trait Culm/leaf RZ543 RG532
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus