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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0376300.1

CTGAAATATATCTCATGATTTTAATCATATATAGCTGGATTATTTTGGAGCGAAACAGAAATTATGATACATTGGTTTGGTACAAAGTAATTTTAATAGTGATAAGAGCAATTCTGATGCATTTATTATGATCTGCACAGAAGTTCTAACAAGGAACGAAACAATCGACTAAGGCATACATCTTTAATTCATAAAATATTGAATGCTACCATGAGGGGCACATGCAGGGGCAAAGAAAGGTGGAAAGTAACTAGAAAACTGAGAACATGTCAAAACAATCCGAGTTACCTCTAGTAGTCCAGAGGCATGAAAGAGTTCTCTCACTGTATCTAATGTGAAGAAGTATGAAAGGGTGCCATCTGAGCGCATGTATTCCCGGAATCCCACTCTTTGGTGAGGTAAAAACCGAAGCATTGTCATGTCATAGAGTCCGTAGTCCCTAAACAAAACAAGGCCACCTGGTTTTAGAACAGATACACAACGCTCTAGTGTAGCTAGCATATTGTCAAAAGGTATGGCTGATAATGTGAATATCATAGTGATAAAATCCACACCATCAACACAACATGGATTGTCTCTGAGAAAGGCAGGGTATTCTTCTATCATATTACAATTACTTGAGCCTGAAAGGAAAAGGTACCATCGAATCAAACATTATTGGAGTAGATAATTCGGGTAAAAGAAAATTTCAAAACAATTAATTAAACTAGTAAAAGGTCAACATCCTTCGCACATGGACTTCGACAGGATTTGCAGAACAACCAATCTGGAAAAGTTTCCTTCGAAGCATCCAGTAAAAAAGGATGGAACCTATCCTTGACTTCAACTCCTTTTGTGCTGCAAACAATCTCATTTGCCTTCTCCAGAGTTTCTTTGCTACAATCACAAGCATATACAGTTGTGCTTGGACTAGAGCGTAAAATGGGAACAACAGTGCTTCCATTCCCACAACCCACCTCTAAAACCTTTGCACTATCCTTGCTGTTAAGAAGTTCTGGAAATTCCTTTAGCAAATACCTTCTTTCCTTGAAAAACTTGCCGCATGTGTGGCGACGGTGGAAGCTCGTCCAGGCCTCCGAGGGCGGCGGCGGCGGCGGCGTCTCCGGGGTGCCGACGGTCGTGGGAAATGGGGAGAGGTGGTAGGAGAAGGCAGGGTTGGCTTCCACCTCCGCCCGGAGGTCCTCCCACTCGAAGTCGTGGCAGTGGTACTCCTCCGCCTCCGCCGCGCGCTCGCCGCCTCCTTCCATGGTCGAAACTCGCAGGCACGGCTTCCTCCCCGCCCTTACTTATGTCCGACTGGCTTGGATACTGGAAATTCGCCTCAGCCGGAGGCGGCAAAGCGGCGGGGCGGGGAGGTAGCACTGGGAAGAGAGGGTGGCGGCGGAGGTGACTACGGCGAGCGGCGGCGGCGGCGGAGGGTGGTTTCACTTCAGTAGTGGGCCGGTAGTGGGCTGGTCCGAGCGGAAAGAAGCGGAATAGCAGCCGTGTC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.877949
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0376300.1 7 13064565 T G
Osa07LNT0376300.1 7 13064876 C T
Osa07LNT0376300.1 7 13065845 A G
Osa07LNT0376300.1 7 13066262 T C
Osa07LNT0376300.1 7 13066863 T G
Osa07LNT0376300.1 7 13068048 T G
Osa07LNT0376300.1 7 13066818 A C
Osa07LNT0376300.1 7 13066618 G A
Osa07LNT0376300.1 7 13065219 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0376300.1 osa-miR5512b Cleavage 5.0 13.082 1 21
Osa07LNT0376300.1 osa-miR1437b-5p Translation 4.0 17.446 1 21
Osa07LNT0376300.1 osa-miR169i-3p Cleavage 4.0 16.348 1 22
Osa07LNT0376300.1 osa-miR5081 Translation 4.0 12.153 1 22
Osa07LNT0376300.1 osa-miR5512a Cleavage 5.0 13.082 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0376300.1 7 nan Resistance or Tolerance Insect resistance RG773 CDO59
Osa07LNT0376300.1 7 rn7a Resistance or Tolerance Drought tolerance C39 RM214
Osa07LNT0376300.1 7 qHd-7 Physiological trait Flowering RM125 RM432
Osa07LNT0376300.1 7 nan Physiological trait Flowering R2401 R1440
Osa07LNT0376300.1 7 hwd2 Physiological trait Lethality nan nan
Osa07LNT0376300.1 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0376300.1 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0376300.1 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0376300.1 7 yd7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0376300.1 7 qah7 Physiological trait Flowering R2401 C1226
Osa07LNT0376300.1 7 dth7.1 Physiological trait Flowering RM125 RM336
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus