\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0376400.1

AGTTGACACAGTCAACATTCAGATATCATATATTCTTGAAATGTAACTTCCTCACAAGAAGTGCATGTTCTTGATTTACACTGATATGTGGAAGCCCAGAAATCAAAACAAGAGAATTGCTGGCTACAGGATATGAATTGCAGGATCTACAGAACAACACATAGCATGGAGATAAAAAAAAATCCATATCAAAGCTAATCTAATGAACTGACCTCCACAAGCTTCATTTTCCTATAGCCAGTTCTTTGGTGAGGTCTCTTGTAAGGCTGAGGGCTAATGTGTTGTGCCATGGGAAAAGAGTACGAGTAACGGGAAGTTTCCTTCGAAGATCCTTGAAGGTTGCATCAGACAAATTCATGTATGATTCCTCAAGTGATGACAAATATTCTGACTCATGATGCCGAATGATGTTAGTTATTGATACTGCACATTCCTCAGGAGACTGCAATATGGTGGAATCCTTGCAATCGATGTTAGTATCCAGCTGCACATTTCCCTCTTCAAAATAATGAGCACCTACCTGTATTTTCCCTTTAATTTCGACAAGCTGTAATCCATCTATGAATTCCAGAGTCCAAATTGAGCGCCAATTGCCGTTGCAAAAGTTTTGTGGGCTGCGTTTAGCAGCAGAAATAACTGCTGCAAAACGAAAATCAACTCCTGGTCCCTCTATATCTTTTCCGCTGGTACAATAAACAGCACACACCCCTTTTGGATAAGCTTCACCAACATATTTGGATAATTCAACATCCAGGGCACTCCTGAAATCTTCAATGTATGCTGAAGGAAGCTCCTCATCAGCAGCTGGCCTCAATTTTGTACATTTCTGTTTAATATGGTCCACTGTAGCAACTTGAGCAGTCCTAGGATCCAGATAATTGTTCTTGTCAAGCTCCCCATAAGTTGTGATAATTATATCACCGCTGCGGTCAGGGAGCTCGAGGGCCACGAGGTGCGCCTTGTTGTGCTCCGGGAAGGCCTCCGCCGCGGCGGCCTCGTACACCGCCTCGTCCCCCAGCAGCGCTCGCACATCTTTGGCGACGTAGTGGATCTCGCCGGCGGGGGCGTTGGAGAGGAACCAGACGGCGATCTCCCTCTTCTCCTCACCGTCCGACATTTGGGCGGCCGTGGAGGCTGTGGTGGGTGGGGGGCGGCGATGTCGGGTGCGCGGAGAGGGCAGGAGGGGAGAAGCGAGGGGGCAGTGCGTGCCGCTCTTCGGCCGCACTGGCGAGCTGGCAGTGCTCCTACGACCTAGAGGCAGTGCGGGCGAGCCGGCCGCCGGCGAGGCACCGGCCGCGGTGGGGACGAGCGGTGGGCGGTGCTCCGACGTCCAGATCTGGACGAGAAG

Coding Potentia
Explanation CPC Score
noncoding -1.22443
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0376400.1 7 13074913 G A
Osa07LNT0376400.1 7 13075133 T C
Osa07LNT0376400.1 7 13075616 T A
Osa07LNT0376400.1 7 13075708 A C
Osa07LNT0376400.1 7 13075729 G A
Osa07LNT0376400.1 7 13076406 G A
Osa07LNT0376400.1 7 13077429 A T
Osa07LNT0376400.1 7 13078173 T C
Osa07LNT0376400.1 7 13077699 T C
Osa07LNT0376400.1 7 13076025 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0376400.1 osa-miR6253 Translation 3.5 11.223 1 22
Osa07LNT0376400.1 osa-miR166h-5p Cleavage 4.0 12.883 1 21
Osa07LNT0376400.1 osa-miR408-3p Cleavage 4.5 24.253 1 21
Osa07LNT0376400.1 osa-miR1860-3p Translation 4.5 14.22 1 22
Osa07LNT0376400.1 osa-miR1866-5p Translation 4.0 15.826 1 24
Osa07LNT0376400.1 osa-miR2275a Translation 5.0 23.219 1 22
Osa07LNT0376400.1 osa-miR2275b Translation 5.0 23.219 1 22
Osa07LNT0376400.1 osa-miR2275d Cleavage 4.5 23.212 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0376400.1 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0376400.1 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0376400.1 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0376400.1 7 yd7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0376400.1 7 dth7.1 Physiological trait Flowering RM125 RM336
Osa07LNT0376400.1 7 qah7 Physiological trait Flowering R2401 C1226
Osa07LNT0376400.1 7 nan Resistance or Tolerance Insect resistance RG773 CDO59
Osa07LNT0376400.1 7 rn7a Resistance or Tolerance Drought tolerance C39 RM214
Osa07LNT0376400.1 7 qHd-7 Physiological trait Flowering RM125 RM432
Osa07LNT0376400.1 7 nan Physiological trait Flowering R2401 R1440
Osa07LNT0376400.1 7 hwd2 Physiological trait Lethality nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus