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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0376700.2

CATTGATCCAATTCAAGATTATTCAAAATTGACTTCAGAGTCAGGATAACACATTAGTTACACTGACCAGATATAATCTGATATTTGAGATTTATTTGATTGAGGATTTTTTTCATAAAAAAAGAATTACTACACCATATTCATAAAGGATGTCGTTTAGGACAATATTTAAGTCAAACATTGGGAATATAAATCATGAATAACTCTTAAGTTGTTGAGTTTAAAAATGTAAAAATTATATGTATAGATTTGTTTTGAAAAATATTTTCATAAAAGTATACATATATAACTTTTCAATAAATATTTTTATAGAAATAAGAAGTCAAAGTTGTGTTTTGGAGAACGTGTCGCTGTCCTAAACGACTTCCTTTACGAGTATGGAGGGGTAGTAGCTATGGCCAGTAAAGATCCAACCACCAGCTTGCATGTGCTTGAGATGTACTGCACGCTTGCTGATCCCTATCACCATCTACAATGAGAATAATAAGAGCAATCCATGAGAATTGGTCTAGACAGTTTTTACAATAGAAGGTAAATATGCCCACAAAATATATAGAGAAGTTGGTTAGGGAAGCATGACTAACTCAAAAAACTAAAATATGTATGGCTGTAAAGTAGGGAGAAATGGTGTTTCCATACGTTGGCACAAAACAAAATAACTTAACTAAAATACCTTTCATTTGTATCACAAAGAACTAAACTGCATTTTAATAATTGACCTAGTGAAAACTTAATATGTGGTAGAAAAACAACAGATCATGTAGCTACTGAAATATGGCTATCGTTCCATATTGAGAAGGAAATTATTGCTCAGGTTAAGCCTCTATCATCTTACTGTGCTTGGTTCTTCAACTGATAGCTTCATTATTTTTTTTCATGAGCTGAGGACAGTGGGTTGCCCCTCTCAACAAAAGTAGGAGTTTTGTTTTGCAAGAAGATAATTTGTTCCATCTGATTGCATAGGATCTGTCACCTCACTTGTCTCAAGATAAAGAACAACTAAGACATAAATATAAATCATGGATGTTGTATACAAAAGAACAATTTTCATGAACTCCTATCCAAAAAGTAAGAACACTTGCTATAACAACAGGATATTTTGTAAAGAAATAGGAAGAACATGGAGCCGATGGCAACTATATTAGTGGTACATGCGCTCATGTGAAATCAAGGAAAACTAATGTACTCCCACATTCTAGCATTTCCCACATTATATGTCTAGATTCATTAGCATCAATATGAATGTGGAAAATGCTAGAATGACTATATGTATATATGTCTAGATTCATTAGTATCAATATGAATGTGGGAAATGCTAAAATGACTTACATTGTGAAACGGAGGAAGTATATAGACAACCCATCATAGAATGAAGAAGCGCATCTAGAATTTCTCATAGGATCTCTTTAAAAAAAAATCAAAGCTGAACACATGTTGCAGAGCCTTTCATGTGGGTCTGAACTTATCGCACAATCATTTATGAATATTCTTCATTTGTATCTTGTACATATAAATTGGAAGACCTACAAACTCAATATAATTCAAATGCAAGCACCTGCAGTTGCTGAAAGTGAGATGTCTTGTTCATTTTCCAAAATGATGGTCATTCAATAGTTTGTCGATGAGATAAACATTGCATGATTGTAATATGCTGCAAATTAAAAACATGATGAACCAAAACTTAGTTGATTTGAAAATTTGATATGGCAACTAAAGCAAATATGAAAGTACTGGATTAAGGAGCTGATTTCTACAACTTCCATATACAAAGAATGGCATTATCTGCCATGTAAATGGGGTGAAAACCCTCTGCAAGTTGACAGATCAAGTTATAGTTGAACTGCAATACACAGACTTCTTATCAGAAGTTACCTCTGTCCTTAAACTTGATACCTGCAACTTTGCAGTTTTTCACATTCTCTGATTTGGACTTCAGAGATTGCAAATATCAGCTAGATGTAAATTGCATACTAAGAAAAGAAAATCATATAATTGAAATTAGGATGAAGCATGAACCAATCACCTCATAAATTGGAATGTGGTCTGAATATAAATACATAATGTAGTCTCTGAAAACTGCATCAGAGTAGCACAATCTTTTGCCCATCTTTTCCCCTAGTTCCTCTATTGTTCCCTTCTCACTTCAATTCCATTGGATCTCTCGTTTGGGTGGCTGGATCTTCCGATGTGGCAACGACGGCTAGAAAAGCGCAGTGGCGGCGGCGGCGTCGACGACGGCGGTAGTGACGGCGGCGGTGACGTCATGGCAGCGGCGGCGACGTCGTGGCAGCGGCGGCGGTGGCGACAACGGCGATGACGGCGTATGCGAGGGGAGGAGAAGGATGAGGGAGCAGGCCGGCGCGCGTGAGGGAGGAGGAGGCGAGGCGGCGCACTTGCGCGGCTGCGGGTGAAGCGAGG

Coding Potentia
Explanation CPC Score
noncoding -1.23213
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0376700.2 7 13310969 C A
Osa07LNT0376700.2 7 13311590 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0376700.2 osa-miR5824 Cleavage 4.5 12.074 1 24
Osa07LNT0376700.2 osa-miR6248 Cleavage 4.5 17.071 1 21
Osa07LNT0376700.2 osa-miR443 Translation 5.0 12.319 1 22
Osa07LNT0376700.2 osa-miR1438 Cleavage 5.0 13.353 1 22
Osa07LNT0376700.2 osa-miR1438 Cleavage 5.0 16.714 1 22
Osa07LNT0376700.2 osa-miR2105 Cleavage 4.0 11.534 1 20
Osa07LNT0376700.2 osa-miR2122 Cleavage 5.0 12.452 1 22
Osa07LNT0376700.2 osa-miR2875 Cleavage 4.0 11.674 1 24
Osa07LNT0376700.2 osa-miR2907a Translation 5.0 19.076 1 22
Osa07LNT0376700.2 osa-miR2907b Translation 5.0 19.076 1 22
Osa07LNT0376700.2 osa-miR2907c Translation 5.0 19.076 1 22
Osa07LNT0376700.2 osa-miR2907d Translation 5.0 19.076 1 22
Osa07LNT0376700.2 osa-miR2926 Cleavage 5.0 23.596 1 20
Osa07LNT0376700.2 osa-miR2930 Cleavage 2.5 17.985 1 22
Osa07LNT0376700.2 osa-miR5081 Translation 5.0 16.776 1 22
Osa07LNT0376700.2 osa-miR5521 Translation 4.0 13.249 1 21
Osa07LNT0376700.2 osa-miR5081 Cleavage 4.0 17.336 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0376700.2 7 nan Resistance or Tolerance Insect resistance RG773 CDO59
Osa07LNT0376700.2 7 rn7a Resistance or Tolerance Drought tolerance C39 RM214
Osa07LNT0376700.2 7 qHd-7 Physiological trait Flowering RM125 RM432
Osa07LNT0376700.2 7 nan Physiological trait Flowering R2401 R1440
Osa07LNT0376700.2 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0376700.2 7 hwd2 Physiological trait Lethality nan nan
Osa07LNT0376700.2 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0376700.2 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0376700.2 7 qah7 Physiological trait Flowering R2401 C1226
Osa07LNT0376700.2 7 yd7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0376700.2 7 dth7.1 Physiological trait Flowering RM125 RM336
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus