\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0376800.2

GCATTCGAAAGTGACGGTACCGAAGATGATATTTAAGGAGCAAAGTTTTGCATCTAGACTAGACTGCTGGATAATATACATTGATATATAGCGTAGACCAACTAAAGAAAAATAAATTTGAGTTTGGCATTACTATTTACAAGGATAGCTTTGGCTGTTTGCCAAATTAATTTATACAGCAAGAGCAATGCTGCTTTAGATCAATCACGGATATGATGGCTCCTGTGGGTGTATCTCAAACGCTGCCGTCTGGGCACAAATGATGGGTCATCAAGGCTCCTGTTGATACCTGAACGATGGCTACTACCATTCGGCTGATCAAATAGCTGGGGACGAAAGCCATGATAGTCGCTGTTGTTCCTGTAGGGTCGATTCAACAAGCCTCGACGCGCTAGGCTCTGTCTACTCGGCCGTCGGATACGGTGCCAATCTGACCGTGAGCTGCTCCTATTGGTGAACGAAAACCGGGGCAACACTCTGTTATTCTGAGGCTGAAACCTTGGCAGTCCATGCCTTTCATCTGCCCAGATTATTGATGATTCTGGAGCTTCATTCGGCAAGAGCCTAGGGGAGTTATACCTGTTATCAGGTGATTCTATTGAGTCGCGCCACCACTCATCGTTGCTTTCATCTCCAGTGTTTTCATCAGGAGACATCGCATCTCTAGTCTCAATAACATAGTCACCAACTATTATTGCCCCAGGATTCTGTGACCTAATTGCACTTATGACATCACCAACCTCCTGTTCACGCTCAAGGCGATCCCAAGTCCTTTTCCTCGAAAGATCCACATGTGCAGGCTTTGCAAGCAAATGGGCGGTTCTAGCGTGTTCACGCAGCTGCTCGTAGGTTCCAACAAATTTGCAGGAATCATGAGAACATGTTCTCAACTTCTCGTTAAGATACTTCCTCACTTCTCCAGCAGGAATCCAGCCAGATACAGAACCTCTACAGAGAGGGCACTTCAAGTCAGCTGAACTTTGCATGGCATCATGACATTCTTCCATTAAAATGCTATCTTCTACGGGTAATGTTGAATTTGCAGGTTCTTGGTTATTAGCATTATTGACATGTCTTCCTAGTCTTGGGCTTTGTAAATGTCTTACTATCTCCATTCATTTTTCTGAATCGATCTAGGCAATTAGAGTGTCGATGACTTGTGTTACAAATGTAACATCTACAGCCATTCTTGTAGGAACTGCATACAAGTAAAACAGCATTGTGGGGTTGCTCCATACAAATAGGGCAAGAAATCCTGTCCCATTCCATATGCAGAGCAGTGCATGATGTGACTGTAGATCTGTTACTTTTCCTACTTGTCATCTTGAAATCAACTGTGTTGAATTCACTTGATCGTTAGAATTTTTGAAAAGGAAAAACTATTCAGTGTCTCAAACTTAGCATTTACGCAATTAGTGAAAAACATTACCTTGCTAAACATATCCTTATATACTCATTAAAAACCATCAATTTTATAACAACAAACATGAATGATCCAAATTAGAAGTGCCAAAACAAAATACCAAGGCAAATTAGTCAGGTCTAACACAATTATTAAGAACTGTATAAAAATGAATTTCAGATCATTTAGCAGGCATCAGATTTTAGTTTTCCAAATAAATATTAGTCCTAAAGAAAGTATTGTGGTGACTAGTGAGGACGATCTCATGCATAAAATAATTAGAAAAAAAAACGAAACAAGTGAATGAGAAAGTGCAGCTAAACAACAACTATTCTTGAATCATTATATCCATGGTTCCTAAACAAAGATTGCACTAAAAAAGAACAAACTGCAGAACTCCCCCCTAAAAACATTATTTTCGGTCTTCTATGGTGTATAGAAATCAAGAAAGTTTGTTTAAATGCAGAAGAGGTGTTGGCAACATGTACACAAACAAACAAAACAACAGATGAAAAACGAACAAATGGGACATCATTAAGCATATACAAATAAGTACATTTAACTTATCTTTGGACAGAATGCTAGTACTAACCTACAGGGAGCAGTTGTATGCACTGAACACTTCAAAAGAACAAAGGATGGTTATGGTATTCACGATAGGAATCCTGAAAAAAAATGTTTACAGTTAGTAAAAGAGAAACTAGGTAAGCAGAATCTACGTAAACAGAATCCAGTGACGAGAATAAAGAATCCAAAACAACTCTGTACAGACACAACAATAGGTATCAGCACATTGTGGTTCATCTGGACCAAACATAAATTCACCATACTTTCTATCAGTTTGGACAGGAGTTGCAGAAACCATTATAATCAAACATATTCAGCTGCAAACGGCTAATTTTGTAGCCATTCTCCAATTTATCTCATTATGCTAGACACAGGAGTTACCGTAAGAAAATATTAGATCTCCTTCAATACATTATGTACGTGTATGCATCCATCTATTTCAAACGTTCCTAACCAAATCTACACGTACGAACTAGAATTAGGTAAAGTTTCCTGTAGGAAAAATGAACAAAGGTCCTTGAGCCACAACATTTAGTGAGCACGCATGTACAGCGTGCGTGAGTTTATTATAGCATTCATGATTGCATAAAGATTCAGCACTACATAAGTTTTCATCACATGTATTACGGTGAATATCTCCTAAATTACCATAGAAATGGACTATTTTCAACCACAGGCTTCTATATAAACACTAAAAAGCGTAAAATCGCGCAGTGATCCATGCACAGTTGGCATCAAGCAAACTTGGCCCTAACGGATTCATATGTATCCTGGATCGATCATCGTCAGACCTCCGTACAAATCAATACACGAACGAACGACAAGGACAGCAACCCACGAAAGGGGAGAATTCCTGACGCTCCTCGTTCATCGATGCCTTGAAACGATAGAAATTAATCCCCCCGCAACCCACTCTTGTTACAATCTCCGAACAGATCAGAACCAAATCGCTGCCCCCCCCCAACCCAAATTCACCCAACGAGACCTACCCCAACGAGACCTACCCAAATCAGCGACCGATCACCGCAAACCGAACCCTTCCCCCCACACAACCCACCGATCGATCGGGACGGATCGACCGACCGATCGGTCGATCCGCAGGCGCAGATCAAGAAGCAGGACACC

Coding Potentia
Explanation CPC Score
noncoding -1.30977
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0376800.2 7 13437789 A G
Osa07LNT0376800.2 7 13437684 G A
Osa07LNT0376800.2 7 13437872 C T
Osa07LNT0376800.2 7 13438475 G A
Osa07LNT0376800.2 7 13438547 A G
Osa07LNT0376800.2 7 13438992 T C
Osa07LNT0376800.2 7 13439497 A G
Osa07LNT0376800.2 7 13439602 G C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0376800.2 osa-miR5815 Translation 4.0 14.004 1 24
Osa07LNT0376800.2 osa-miR394 Cleavage 5.0 12.507 1 20
Osa07LNT0376800.2 osa-miR319a-5p Cleavage 5.0 20.903 1 21
Osa07LNT0376800.2 osa-miR166i-5p Translation 4.5 12.683 1 21
Osa07LNT0376800.2 osa-miR1442 Translation 4.0 8.208 1 20
Osa07LNT0376800.2 osa-miR1849 Translation 4.0 19.647 1 21
Osa07LNT0376800.2 osa-miR5486 Cleavage 4.0 13.627 1 21
Osa07LNT0376800.2 osa-miR5501 Cleavage 4.5 15.125 1 21
Osa07LNT0376800.2 osa-miR1851 Cleavage 5.0 10.643 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0376800.2 7 nan Resistance or Tolerance Insect resistance RG773 CDO59
Osa07LNT0376800.2 7 rn7a Resistance or Tolerance Drought tolerance C39 RM214
Osa07LNT0376800.2 7 qHd-7 Physiological trait Flowering RM125 RM432
Osa07LNT0376800.2 7 nan Physiological trait Flowering R2401 R1440
Osa07LNT0376800.2 7 hwd2 Physiological trait Lethality nan nan
Osa07LNT0376800.2 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0376800.2 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0376800.2 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0376800.2 7 qah7 Physiological trait Flowering R2401 C1226
Osa07LNT0376800.2 7 dth7.1 Physiological trait Flowering RM125 RM336
Osa07LNT0376800.2 7 yd7a Morphological trait Panicle/flower R1440 RG128
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus