>Osa07LNT0376900.2

GCATTTCTTAGATTAGGGTGCTTGTCAATGGCATTTTATGGATTTTCTCAATAATTATTATCCTTCACTTTTCCCTACACTAAGGCAAAGAAAATGTGTGTACATCAAATTGACTGCCACTATGAAGATGATATTCTATCAGTCGAAAACGCTAAAAAAAATACAATAGCAATGCAAAAGTAAACACCTTTCATCGCTTAAGTTGCCTGAAGTTGAAAGCCATTCAAGATCCATTGTTTGAATCACTTGAATGAATGCAACTTTCAGTTTCAATGCCTGGAACATGATGTATCTGAGGTACCATGGGTGTGTATACCTTAAGTTTGATACCTCACTTTCACAAGTCAATGAAATTTCATTGCCATGTACTGAACCAGATTCCAATACTGGAAATTGTGACCCACTTTTAACATCAAGCGGTGTTGCATTCAACAACTGACGTCTTCATTATGGCAACCACTACATCCAGATATGGATGTGTTGCTTTCACAAAGAATGCTGCCATATGATATCTCTCTTTTTATTGTACTGGTAGGTGGTGCACGGAACGCCACTTTCAAAAGAACATCAAGCACACTATAGAACTCAGTCAACCTCAGAGCACGGAACGCCACTTTTAAAAGAACATCAAGCACATTTATAGGTTTTCTAGGGAGTTTTCATGAAGATCCCAATGCAAGAACCTCAAATGATTTTCGGCTGGTATGCTCTTGTTTATTATCCTTAACACCATATCAAATTCACGACGAAGTATTGACTCTCGCCTCTCACGTTTTTTCCCATGTGAACAACAAAAATAAATGTGAGAAGGCATTCCAAAATATCATTCATGTCCAGGTATATAAATGTTACACAAGATGCTGCTACTCTGGAATAACAAGGTCAAACTAACCTTAATCAAGTCTAAAAAAAATGATAGGATCTCCATATCTTCTCCTAGGATTCTCAAAATGGAGCCTAGTAGCTTCTTAATTCTCGCCCTTCTGATCCAGTATAATATCAGGTTAATTGTTCATCTTTGATGTCTCCTCTGACCAAAATAGAGGGATTGAACCTCTGTTTTGCACAACAGAACTTGCTTCTGTAGGCCAAGGTCTAGCTCCATACACAATTTGCTCAGTCTCAGCATCATTTGCTACTCAGCCTTTCTCATTCACCCCCATCTTTAAATATCTATTCAGCAGCAGATAAACTTTTTCACCCCAAATCCCACTGCTTAAAAAATCCATAGACCAACGCAACGGTCCACAAAGTACTTCCAAGAAAATTGTGTATCCCTTGTGTAACACATTCATTCCACACAAAAGTTGACTCATATACGCTCCAGCCTTCCTGTGGATCACTCAAGTTTTTTGAAGACTTGTCATGATATGGTATGAGTAACTGAAAAAGAAGTCCTTTCTAAGATCAAGTGTATTCAGTATCTCCTTGTATCTATCAGAGCTGATATTGTACACGGCACCTTGTTCACAAGAATTTAAGGTACTTGATTGATAGCTTTCCTGATGTCACCAGAATATCGTAAATAAGCGTGCTTGCTAACTTTATTACTTCACTAAGTCCACGTCGATGATGAAGTCCAGCGGGTCTTCATCCCCATCTCCTCTTCCACTCCCTCCACTGCCTTTGTGGACGTTGTCGCCGCCGTTGCTGGCCACCTCTGTCCTTTCTTCTTTGACCGTTATGTTGCTGGATTTGATACCCGTCGGCAGCGCCTCGGTGGCCCGGCTCCACGGTGGAAGAAGTCGGTGGAGGTGCAACAGTCAGGCACTTCAGTAGCTTGTGCTTCATCCTCCCATCCAGATGCTTGTGCTAGCTAAACCCCAATGCAGTGCTAATGACAACCGCATCGTGCTCCTCCGATCCATGCCCGGGGCGATGGAGACCGAGCAGGAAGACGAGGGGCAGGAGGAGCTTCAAGGCACCGTCGCCTTGAAGACGCAGCCGCTGCCGTATCTGGAGCTTGTTTGCGCCGCCAGTAGATCCCCCTGCTGTAATGGAACCCGTTTGCCCGATCCGCCACCGATCTGGTGTAGATGGCAGCCGCGCGCGCGGTGAAGAAACTCAGCTTGAGCTCCAACCGACAGAGATCGCACAGAGGCGACGTTGACGGTGGTGGCGGAGGCGGACAAGGCTGCTCTCGACGACGGCGACGGCGACGGCACAAGGGGGAGGCGGAGGTGGCGGCGGTGGAGGTGGACGCGGCGGCGGTGGGGGTGGAGGCGGCGGCGGCGGAGGTGGAGGCGGAGACGGCGGCGTGAGGGGAGGCGCTCAGAAACGGCGCCGGTAGTGGCGGAGGAGGAGGCGCTAGGGTTTGAGGGGCCGGCAACAGCAGCGGGAGTGGTAGTGGCGGCGCGAGGGGGTGGTGGCGGCGCGAGGCGACGGGGGAGGCAGAGGCGGCGGCGGCGGCGGCGCGAGAGAGGGAGCGGGAGAGGGAGAGGGAGCAGC

Explanation	CPC Score
noncoding (weak)	-0.931404

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa07LNT0376900.2	DTM_#DNAt_MULE_japo_Os0335	Chr7	-	13524017	13525163	48

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa07LNT0376900.2	osa-miR5814	Cleavage	4.0	9.256	1	24
Osa07LNT0376900.2	osa-miR2873c	Cleavage	3.5	9.068	1	21
Osa07LNT0376900.2	osa-miR394	Cleavage	5.0	17.237	1	20
Osa07LNT0376900.2	osa-miR397b	Cleavage	5.0	12.23	1	21
Osa07LNT0376900.2	osa-miR169i-3p	Translation	5.0	23.172	1	22
Osa07LNT0376900.2	osa-miR435	Cleavage	5.0	17.502	1	20
Osa07LNT0376900.2	osa-miR1864	Cleavage	5.0	12.383	1	24
Osa07LNT0376900.2	osa-miR2118i	Cleavage	4.5	24.347	1	22
Osa07LNT0376900.2	osa-miR1863c	Cleavage	4.0	16.57	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa07LNT0376900.2	7	nan	Resistance or Tolerance	Insect resistance	RG773	CDO59
Osa07LNT0376900.2	7	qHd-7	Physiological trait	Flowering	RM125	RM432
Osa07LNT0376900.2	7	nan	Physiological trait	Flowering	R2401	R1440
Osa07LNT0376900.2	7	gw7	Morphological trait	Panicle/flower	R1440	RG128
Osa07LNT0376900.2	7	hwd2	Physiological trait	Lethality	nan	nan
Osa07LNT0376900.2	7	gp7a	Morphological trait	Panicle/flower	R1440	RG128
Osa07LNT0376900.2	7	qah7	Physiological trait	Flowering	R2401	C1226
Osa07LNT0376900.2	7	dth7.1	Physiological trait	Flowering	RM125	RM336
Osa07LNT0376900.2	7	tp7b	Morphological trait	Culm/leaf	R1440	RG128
Osa07LNT0376900.2	7	yd7a	Morphological trait	Panicle/flower	R1440	RG128

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus