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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0377000.1

CCTGAAGTATTCTTCCCATTCTTCAGGCATGATAAGCTGAACACAATGCTCTTGGAAGCAAGAGAATACAATTTGATGCCAATATTCAGCTGGAACGTTAGAACTAGAACTATTGATTCCAAAGAAAAATGACATCTTCGTATCTATACATGTAACCCTCTACACTGTCATTACCTATTAACATCTCGAGGTTGTGTGGTTTACCTATTGACCCTACAGGGTTGCCTCATCTTGGTTTAAGAATCTTGTCGTCGGCAGTCCATTTTTCAGGTAGAAAGGATATCCATCCCAAAGGTACCAATGCTGCCAAACTTTGCAGCAAAATACACAAAGGGAAGCTTGTGTAATCCCCACCAGACACCCCAATTAAACTGGACAACCCAACTCCAAATACTCCGCTTACTATTGCTGAAAACACCAGTCCAGATGTGAAGAAAGCGAAAAGCGAACCTTCACAGCCAGGTGGGCATTGGCTTGACAACAGAACTGAGAATGGCAAGACCTTGAATTGAGCAATTGCTTCTGCTAGAGCCGAGAAACAAAGCACATGGATCTCATTCGGTATCCCCAACATAAGGTTCACTTGTTTCACCAGGACCAAGTCTGATAGAACTGCCAAAGCATACATCGTCTGAACTCCAGCCACAAGCCGCCTCAAAGGGATCTTTTTGAGATACTTATTGTAGAGGACAGTTAGAGATAGAACCATCACCTGCCCAACAACTTTTGATAGGCCGATGACTGATGGATCAAGCTTCAGATACTGTGTTTGAAAACAAAACATTGTCCCAGAGAGAATAGGCACAACTGCAAATGATGTCATTATCCACATAAGAGGGTAAAAGATCTGCTCCTCGCTGATTGCTGTCCTCAAGTTTGAGAATTGCTTGCGGAGATTGTCAGACAGAGAGGTTCTGACATGACAAATGTTCCAGTTTCTATGAGAGCTTGGAAGCGTCTCTTTTGTACTTAAGGAAAGTGCTAGTTGGAGGCCAAGGAGGATGGAGAATGCTGAGAACATAGTCTTTGGTTCCTGTGTTCTCAACAGAACGTAACCACCAGACAAATTTCCTAAGAGAGATCCAGCTGCCAGAATTATGAACGCGTAAGATTGTAGTACACCGGCCTTCTGCGTTCTACTGAACTCTGTGACAACAGCATCACTTACAACTTCAGTGACAGATGCGCCAAGATTTCCAATAAGAATGCAAGCCATTTGAGTTGGAAATGTGTCCCCTGTTACTGGAATGACTGCAAGTGTTCCCCATGCCATAAGCTGTAGTAACGCTCCGATGGAGATATAGGGGAGGCGGTGGGCGCGGCCGACGTAGACGGCGTCGGAGAGGACCCCAAAGAGCGGCTTGGCGACGAGGGGGAGGTTGCCGGCGTTCTGGACGAGCTGGAGCGCGGCGGGGGTGAGGCCGAGGCCGCGCGTGAGGTGGAAGTTGAG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.990141
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0377000.1 7 13777105 T C
Osa07LNT0377000.1 7 13777247 G C
Osa07LNT0377000.1 7 13777599 T C
Osa07LNT0377000.1 7 13777920 C T
Osa07LNT0377000.1 7 13778181 A G
Osa07LNT0377000.1 7 13778308 G T
Osa07LNT0377000.1 7 13778933 T C
Osa07LNT0377000.1 7 13779323 T G
Osa07LNT0377000.1 7 13779446 A G
Osa07LNT0377000.1 7 13779485 T G
Osa07LNT0377000.1 7 13777169 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0377000.1 osa-miR5794 Cleavage 5.0 22.229 1 21
Osa07LNT0377000.1 osa-miR2122 Translation 3.0 13.834 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0377000.1 7 nan Resistance or Tolerance Insect resistance RG773 CDO59
Osa07LNT0377000.1 7 qHd-7 Physiological trait Flowering RM125 RM432
Osa07LNT0377000.1 7 nan Physiological trait Flowering R2401 R1440
Osa07LNT0377000.1 7 hwd2 Physiological trait Lethality nan nan
Osa07LNT0377000.1 7 dth7.1 Physiological trait Flowering RM125 RM336
Osa07LNT0377000.1 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0377000.1 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0377000.1 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0377000.1 7 yd7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0377000.1 7 qah7 Physiological trait Flowering R2401 C1226
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus