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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0377400.1

CAAAGATGAATTGATACACGATAAAGTGAGGTTTCGAACAAGCAGATGGACGGTCTAGCCGACATGCGCGCTGCAAGCTAAGTAGCAATGGCTAAACTTACAATTAATCAAAACCCTAAGCAACCCTGAAGGGGTATCTGGCTACTTATAGGGGTGCGAGAACGACCAAGAGGATCCTAGGGTCGTGCTCTACCAGATTGGGGCGCACCCCACTGGGCCCCACTTGGGCCGGGGTCCCAAACGAAGTTACAAGCCCAAAGGCCCATGACAGGTGACGCAGCACCTTGTTTTTGTGATTGCGTCAAAACAAGATGGAATTCGGGGATGATGCTGGATCCGTTGGAAAGACGACTCCGAGAGCTTTCCATCAAGTACTCACGGGCCGAAAACGGAGGTCGTATGCAGATTTGGTGGCCGTTTGAAGTCAGCAGTGTAGCAGAATCGGATTCCAGCACTTGGAGGACTTGAACTTAATATCTTGTTGTTCATCTATGATGTGAGCAACGGTTGTATCCATAGTAGCCATGGTCACATCACTTCCTTCTTAATTCTAATGCGCTGAGATTAGCACCACCTTCTTGCAGATTTTGCATATTTCCTTTTGCGGCAAATTGGAGGATGTGCATCTCTTACTGACATGGTTTATTTGTAAATCCCCCCGCGCTTGCATTAGTAATATCGGCAAACAGGGCTGAGGGAGGAAATCTTGCGAAATTAGTACGCAAGTGACATCTTGATGGACTGAATATAACTGACAAAAAAAACTCTTGATGTTGTTAAAGATAAGAGGGGGGAGACCCAATACTGTTACGTTCTTTTTTTATCCCCGGCACTTGTATTAGTAATATCAGCAAAAGGGCCTGATGGAGGAAATCTTGTGAATTCAACATGCAAAACACACCTTAATGGACTAAATAATATGCACATAAATAAACCGATAAAAAAAACTCACGTGATCTTGTTAACGATGCTGGTGTGGAGCCCCCAATATTGTTATCCATATCTTAATGTGTGCAAGCCAGCTGAACAATCCTCACAACATGCTTCACATAGAGTAACAAATGGTTAGCTACATTTGAAGGGATTTGCCACACTGAATTCCAAATCAATGCATCCCATGTAGTATTCGAAGTTAGTTAAAAATCAGGCATCCGTTCACATGTAACAATAGTCACCAACTTCTAAAATCATTTTCAACTTTACGAAATAACTTTGCCCCGGATGAACAAAAGGATAAAAAAATCAAGCTAGTCAACAATGCACTGGTTGTAATTAGACAACTCTTAATCAGCCACCTCATCTTCGCTGAACTTACAACTATGATAAAGAGCCTCCAGAAGTAGTATCAGCAAAAGGTCCAATAAGC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.0853647
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0377400.1 7 14715204 A G
Osa07LNT0377400.1 7 14715218 C G
Osa07LNT0377400.1 7 14715274 A G
Osa07LNT0377400.1 7 14715279 T C
Osa07LNT0377400.1 7 14715431 A G
Osa07LNT0377400.1 7 14715775 T C
Osa07LNT0377400.1 7 14715050 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0377400.1 osa-miR5528 Cleavage 3.5 6.823 1 21
Osa07LNT0377400.1 osa-miR5824 Cleavage 5.0 15.386 1 24
Osa07LNT0377400.1 osa-miR399k Cleavage 5.0 14.258 1 21
Osa07LNT0377400.1 osa-miR166i-3p Cleavage 4.0 19.789 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0377400.1 7 hwd2 Physiological trait Lethality nan nan
Osa07LNT0377400.1 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0377400.1 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0377400.1 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0377400.1 7 yd7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0377400.1 7 dth7.1 Physiological trait Flowering RM125 RM336
Osa07LNT0377400.1 7 qah7 Physiological trait Flowering R2401 C1226
Osa07LNT0377400.1 7 qHd-7 Physiological trait Flowering RM125 RM432
Osa07LNT0377400.1 7 nan Resistance or Tolerance Insect resistance RG773 CDO59
Osa07LNT0377400.1 7 nan Physiological trait Flowering R2401 R1440
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus