© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa07LNT0377900.1
CACCCAAACACACTGATCGATTTCTCCACTAAATACATCCACAATATAGTAGTATGTGCCATGAACAAAAACAGGTTTACAGCTATTACAAGCCACCTTCAATCAAAAGAATGAATACAATATATGAAACCGAAAAATTAAAATGCCAGACCCATTGTAATAATTCTCAAATTTCTCATCCGCAATCTCAGATGCAAGGCACCACCACTTAATAATCAACACCAAACTTTTTCCCTGTACAGCTTTTGGAGATCTGGCTGTTATTTTCGTCCTGTTTTTCTGGGTTGTGAAATTACATGATAAATACTCGGAATTTTTCGCTGCCGATATCAGATGAGCTCATACCATGCTTCTTCTCCTTGAGTGGTCTGTGGTAACTGACTTTGGATTTGAAAGATGGTCAGCACCACCGATGCTCTTGGGTTCAGCCAGCCTCTTCAGTCGCTCGCTGAATGATTCGGTCGATCCACTCTTTTCTTTCTTCAGACCAGTTAGAGATGGAACTGATATACTTAGTCCATTGGCATGCTCTCTGCTTGCTTTAGGAGGATCACTCTTCCCATTACTTCTTGCGGCTATTCTCTTTTGCCTCTCTAGTTTAAGCCTCTCCAGTCGCTTCATTTGTTCTTCCTCCTGCTCTTTCTTCAGTTTCTGGAGATCAGCTTTATATGCTCGCATGTTCTGTGCACGTTTCTGTGCATCATTGAGTGGGGTCTTTGGAGCAGAGAGCCTCCTGAGTATTGCATCCTTCTTTCTTTTATCCGAACCATCCTTTGTACCCCTTATCTTCTCCTTCTCTGGTTTCTTTACATCGCCATCATTACTATGTGAGACATCCTCGTCATTACTGTCTTCAACCTTGACGGCTCTGACCATCATGTTGCTTTCGTAATCCATTGCCGGATCATATCCAAATGAAGCATCTTCAGATCCACGCTCTGGCATCAATTCATCCGGCTCATAGAAGAGTTGAGTTCCAGCCTTCCCATCTGAAGTTTTCTTAGTGTTTGTAGGAAGCTCAACATCAATGTCAATCGTGGCTCGGTATTCCGGCCCAACATTATCTTGTGAACCAGATCTAAGAGGAATTATAAAGGACTCATCAGCCGCGGCATATCCATTCTTGTCCACCTGATTAGGATTCCTGTACCGGGCCTCTGCAAGAGGATCCAAAGCACTCCTCCTATCCATGGACCTTTCCTGGCCATAGAGCATGAAGTCCTCACTTGTCCCTCTCCTGTATCTTCCACCACCAGCTTCTATCTCCTTAATTTCACCATCCATATATCTTCCCCCTTCCCCAGACATCATCAGTTCATCATTGGATTGCAGCCGAATAGCTCTACTCCTCCCATTGACTGGATCAAAGCCTGCTCCTCTCTGTTCATATACATCACCAGAATCTCCCCCAGCCAAAAGAATAGGATCAGCAGTGTTTACATTGTTCTTTTTCCTTGATGGAGGTGCTTTTTCACCAGAAAACATATCTGCATCATTAGATCTTGTTTTTTCTTCTGCTCTCATCAGGAAACTCTGGAATGCATTCCAGTTCCCTTGGTCAGCATCTTGCCCATAAGATGATTCATCCTTGTTATTATAGTCGTCTCCAGAGTCAAAGTTAGTTTTTGCACCCTCCTTTTTCTTTGAACCTGAGCTCTTATGCTTCCCATGTCTCTTTTTGTAGTGTGTGTCATCACTGTCTTGAGACCCATCTTCAGAACTTGACTGCGACTCACTTTCCGACGAGCCATGCTTTTTGGATGTTACATTTACATTTTTTATGACAACTACACTAGGTTTCTTTTTCCCTGATCGCTTACCCTTTTTATGTGACTTGTGACCATGAGAACTCCCTCTTTCAGAACTGCTACCATCACTTCCTTCGTCAAGTACTTCTGACTCTTTACTGTCTGAAGAGTGCTTCCTCGATGATTTCCTTCCCGAGTAGTGATACCTGGGGTCATCCACTGGAGGATATGGAGGGTAGTACGGCCCAGGATAGTAAGGCATTCCTTGCATATGGTAAGGTGGAGGATGCATTGCCCATGGAGGATATGCAGCCTGATACCCCATCTGTTGACCAGACTTATGCTCAGCTTTAGAAGCATCCTCGCCATTTGCCTCTCCATTGGAAACAGACATAGTTTCCGTGTTTTGCTTCATGTTGTCTCCAACAAAAACAATACCCGATGGATTAAAAGGAGGAAATTCAGAGTGTGTAGACATTGCTTCTGGTTCAACTTCAATCCATTGTCCAGTTTCATGCTTTCGCTTCCACAGTTCGATGAACTGCGAACATGCCCTCATCAAACGTGAAGCACCAAAGCGCTCTGCAAACGCAATCAAGTAACCCAGATTGTCGATGTCAAACCCAGCTGCCACAGCACGTGCAAAAGCCATAGCCTGCTCTTTCCTTAAGACATTTTTTCGGGTTTCAAGCACTCTCAGCAGTTGGACTTTTGAATTCTCTTCATGTGTTGTAGTCTCATCATGCACTGCTGGTGTAGGCTGTGATCCAGGCTGGTATATAACAATAGCCTTATCTGCATCAGGGCTGTGATTCGCTCGTGTACCTTCGTTGCTTTCAGTCAATTTTCCTCCATGATCTTCTACAGATCTTAGCCCAAGATTATCGTTGCTCTGAATAGAGATGGCGTCCTCGAGCTGCAAGATCTCGGATTCTATCGTCGTCACTCGCTCAAGCACCTCCGGAGTACTCACGAAGCGCACGAATCTCTCCACGGTGCCTCTTGTAAACCATGGCGCGCCAACCCCTGAGCTCGGCTCAAGCGTAATTGAGTATCCTCCCTTTGCAATCTGATCCTGGGCGACCTTCAGGTGTGCCAGGAACGGGTTTAGCAGGCCAGAGGCTATCTTCTCCTTCCGGCCATTCACTATCACCACCAAATCGAACCTGGTCCGGGTCGGGGTGAGCTGGAACACGGCCGCATCCAGCCTCGCGTCGGGCCTCATTGCCGAAGAGAGAATCCCAACGCAAGAACTCCTCCTCCTCCCTTGTGCTGCTGTCCCCTCCTTTTGTACCCCAGATCTTGCACACAGATTTACCACGAAAAAAAGCGAGCAGAGCCAAGAACCCGGCGCTTTGCTTGGGCCAGATGCTACCCTCCCACCACTGCCACTTGAGAAGTTGAGAGGGAAAGGGAGAAGCAGCAGAAGCAGAAAGGGGAGAGAGTAAAGCTGAAGCCGCCTACTAGTATAAATCCCCAGCAAATGCAGCTCTGGCTGCAGGACAGAGAGTGTTGCAAAATGGATTAAAAAAACCGAAAGAAACTCAAGAACATGGCACTGCGGGGAGGAATGAGTAATTAATCTCGCAGTACTAAGAATTGGAGGTGGCAATAAATAATTGCAGTAGAGCAAGCAGCCAGCCACAGGAGGAGGAGAGAAGAACAGCGAGAGGAGTGTGAAGCGTGTGAGGGAGAGAGAAGAAGAAGAAGGTGGTGCAAGTAGCAC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa07LNT0377900.1 | 7 | 15211368 | A | C |
| Osa07LNT0377900.1 | 7 | 15206566 | G | A |
| Osa07LNT0377900.1 | 7 | 15204403 | A | G |
| Osa07LNT0377900.1 | 7 | 15204425 | C | A |
| Osa07LNT0377900.1 | 7 | 15204505 | A | G |
| Osa07LNT0377900.1 | 7 | 15205521 | A | G |
| Osa07LNT0377900.1 | 7 | 15205749 | C | T |
| Osa07LNT0377900.1 | 7 | 15205991 | A | C |
| Osa07LNT0377900.1 | 7 | 15206402 | C | T |
| Osa07LNT0377900.1 | 7 | 15206864 | A | T |
| Osa07LNT0377900.1 | 7 | 15207584 | C | A |
| Osa07LNT0377900.1 | 7 | 15207587 | G | A |
| Osa07LNT0377900.1 | 7 | 15207824 | A | G |
| Osa07LNT0377900.1 | 7 | 15207958 | T | G |
| Osa07LNT0377900.1 | 7 | 15208162 | T | C |
| Osa07LNT0377900.1 | 7 | 15209089 | A | G |
| Osa07LNT0377900.1 | 7 | 15209403 | C | T |
| Osa07LNT0377900.1 | 7 | 15209514 | T | C |
| Osa07LNT0377900.1 | 7 | 15209848 | G | T |
| Osa07LNT0377900.1 | 7 | 15210004 | G | A |
| Osa07LNT0377900.1 | 7 | 15210023 | A | G |
| Osa07LNT0377900.1 | 7 | 15210099 | A | G |
| Osa07LNT0377900.1 | 7 | 15210141 | A | G |
| Osa07LNT0377900.1 | 7 | 15210207 | C | A |
| Osa07LNT0377900.1 | 7 | 15210212 | A | G |
| Osa07LNT0377900.1 | 7 | 15210598 | A | C |
| Osa07LNT0377900.1 | 7 | 15210618 | T | C |
| Osa07LNT0377900.1 | 7 | 15211021 | T | C |
| Osa07LNT0377900.1 | 7 | 15211354 | A | G |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa07LNT0377900.1 | DTM_#DNAt_MULE_japo_Os0089 | Chr7 | - | 15204764 | 15205481 | 717 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa07LNT0377900.1 | osa-miR5540 | Cleavage | 4.5 | 10.827 | 1 | 21 |
| Osa07LNT0377900.1 | osa-miR5830 | Cleavage | 4.5 | 22.318 | 1 | 24 |
| Osa07LNT0377900.1 | osa-miR5837.1 | Cleavage | 5.0 | 16.415 | 1 | 21 |
| Osa07LNT0377900.1 | osa-miR7693-3p | Cleavage | 5.0 | 24.142 | 1 | 22 |
| Osa07LNT0377900.1 | osa-miR156f-3p | Cleavage | 4.5 | 18.396 | 1 | 22 |
| Osa07LNT0377900.1 | osa-miR156h-3p | Cleavage | 4.5 | 18.396 | 1 | 22 |
| Osa07LNT0377900.1 | osa-miR156j-3p | Cleavage | 4.0 | 18.396 | 1 | 22 |
| Osa07LNT0377900.1 | osa-miR399a | Cleavage | 5.0 | 11.298 | 1 | 21 |
| Osa07LNT0377900.1 | osa-miR399b | Cleavage | 5.0 | 11.298 | 1 | 21 |
| Osa07LNT0377900.1 | osa-miR399c | Cleavage | 5.0 | 11.298 | 1 | 21 |
| Osa07LNT0377900.1 | osa-miR156l-3p | Cleavage | 4.5 | 18.396 | 1 | 22 |
| Osa07LNT0377900.1 | osa-miR418 | Cleavage | 4.0 | 11.941 | 1 | 21 |
| Osa07LNT0377900.1 | osa-miR1874-3p | Cleavage | 4.5 | 15.663 | 1 | 24 |
| Osa07LNT0377900.1 | osa-miR1875 | Translation | 5.0 | 15.283 | 1 | 24 |
| Osa07LNT0377900.1 | osa-miR2104 | Translation | 3.5 | 15.081 | 1 | 22 |
| Osa07LNT0377900.1 | osa-miR5151 | Cleavage | 5.0 | 14.963 | 1 | 22 |
| Osa07LNT0377900.1 | osa-miR5340 | Translation | 4.0 | 14.018 | 1 | 23 |
| Osa07LNT0377900.1 | osa-miR5522 | Translation | 5.0 | 14.007 | 1 | 21 |
| Osa07LNT0377900.1 | osa-miR2104 | Cleavage | 5.0 | 17.56 | 1 | 22 |
| Osa07LNT0377900.1 | osa-miR5487 | Translation | 5.0 | 15.035 | 1 | 21 |
| Osa07LNT0377900.1 | osa-miR5498 | Cleavage | 5.0 | 16.679 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa07LNT0377900.1 | 7 | qHd-7 | Physiological trait | Flowering | RM125 | RM432 |
| Osa07LNT0377900.1 | 7 | nan | Physiological trait | Flowering | R2401 | R1440 |
| Osa07LNT0377900.1 | 7 | dth7.1 | Physiological trait | Flowering | RM125 | RM336 |
| Osa07LNT0377900.1 | 7 | hwd2 | Physiological trait | Lethality | nan | nan |
| Osa07LNT0377900.1 | 7 | gw7 | Morphological trait | Panicle/flower | R1440 | RG128 |
| Osa07LNT0377900.1 | 7 | gp7a | Morphological trait | Panicle/flower | R1440 | RG128 |
| Osa07LNT0377900.1 | 7 | tp7b | Morphological trait | Culm/leaf | R1440 | RG128 |
| Osa07LNT0377900.1 | 7 | yd7a | Morphological trait | Panicle/flower | R1440 | RG128 |
| Osa07LNT0377900.1 | 7 | qah7 | Physiological trait | Flowering | R2401 | C1226 |
| Osa07LNT0377900.1 | 7 | nan | Resistance or Tolerance | Insect resistance | RG773 | CDO59 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)