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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0378300.1

CTCCTCGTTCCCTCACCTCAGCGCCGCCGCCGCCGCAAGCCCCGCCGCCGCCGTCCGTCCTCCCCTCGACGTCGCCTTTCGCTCTCCCCCCGTGGTCGCCGTGCGCCATCCCCCGCCGCCGCCGTGCGTCATCTGGCGCCGGTCCCCCTTCCCCCTTCTTCGCCCTCCCCTCGCGGCGGTGGCGTAACCGGCGCCGGTTTCCCCCTCCCCTCGTGGCGGCGTCTGAGTCGGCTCCGGTGCTCCCCTCCCTCTTCCATCCCCTTTCGACGGCGTCGGGGATGACGGCAACGCGGTGGTGGTGGCGGTGTCAGGTGCGGGTAGAAAGGAGCTGGTGACGGGCGGGGACAAGGCGTCCCGATCTGCACTGACTCGATCTGCGCGAGCCAACCCCGCGCCGGATTGAATAGGGTATGAGGGGAGAGGACGGCGGCATGGGAGGATGAAGAGGACAACGCCGATGGAGAAAGGGGTGAGGTTGCCCGGCGGGGGATGCTGGCCTTCACCGACGCGTGGCTCCCCCCGCCGCGGCCGTCGTCGACCGTCCTCCACCCGTCGTCGCCACCCCCCCCCCTTCTCCCCTATCTCGGGCCTCTTCCCGACCTCATGCCTGCACGAGCGCCGGCCGCGTCCCGTGCTCCTCTCCTGGCGGCGGCGTCGGAGCCGGCGCCCGGTGCCGTCCTCCCTTCTGGATCGATGGATTTGGAGGTAGTACCGGCGGTGGCGGTGTTGGGAGGAATCTATATGAGTATTTCACTTTCATTCCTCCTCCTCTCACTCTCACTACCGATCGGGAGCGCGGAGTGGTGATGGTGGCGATGTCGGAGCGGGGGTGCTGGTCGCGTCCATGGCTCACCTCATCAGGGCACGCGCCATCCGCGCCGGCACCATCATCCGCGTCCTCGACTATCTCTTCATCGACTCCGACATCAACACAAGTTCAGGGTCATTATCGTCCAGCAACTTGAATTGCTGCAAACTGAGTGTGCACTGATCGGTACTAGCAATACTCATGCGAGCCCAGTAAACTTTATCTCACATGGAACCATGCATTTCCTTTCCATTGTGAGCTGTCCCCGGCATGTTGCTACTGGGTACCTGTTCTGACCGACGTGGTGGAGTGGTGATGTTGCAGAACGCGTACAACATGCTCCACAGCGACATGGTGGCGGCCGTGCGTATTGCGCACGCATGCTGTATGTTCCTCGACGAGCTCAGCACCACATACCTCTTTCCTGCCCACCACAACGTCAACGTCAACATACTGGGGATATATACATGACAAAAGAACAGAGCAAACTCCTTTTTTATCCAAATCATTGTTCACTGAAGTGGAGTTGTTTCTCAGAGACCTCACTAATAGGGTGAGCTTACAAGACTGATCATTGTTAGTCTTCAGCTGGAAACCAAGCAAAAGATGTCATACTGTTGTAACCATGTTTGAAGACAATTTCGTTGCCTCTTGTTTGAAGATGGCAATTGTCATAATGCGTGGTTTGTCAAAAATATGTCCACTGTGACATGCGTATATGTATTAATAATTTGTCAGTTATTTGTACCTATCTGTTTTGCCTAGATGATTATTGTAAATGCTCTTATC

Coding Potentia
Explanation CPC Score
noncoding -1.14792
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0378300.1 7 15726622 G A
Osa07LNT0378300.1 7 15726769 A G
Osa07LNT0378300.1 7 15727684 T C
Osa07LNT0378300.1 7 15728053 A G
Osa07LNT0378300.1 7 15728185 A C
Osa07LNT0378300.1 7 15728209 A G
Osa07LNT0378300.1 7 15728364 T C
Osa07LNT0378300.1 7 15728577 T C
Osa07LNT0378300.1 7 15728836 A G
Osa07LNT0378300.1 7 15728872 C T
Osa07LNT0378300.1 7 15728979 G C
Osa07LNT0378300.1 7 15729053 A T
Osa07LNT0378300.1 7 15729561 A G
Osa07LNT0378300.1 7 15729708 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0378300.1 osa-miR1858a Cleavage 4.5 14.19 1 21
Osa07LNT0378300.1 osa-miR1858a Translation 3.5 22.754 1 21
Osa07LNT0378300.1 osa-miR1858b Cleavage 4.5 14.19 1 21
Osa07LNT0378300.1 osa-miR1858b Translation 3.5 22.754 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0378300.1 7 dth7.1 Physiological trait Flowering RM125 RM336
Osa07LNT0378300.1 7 qah7 Physiological trait Flowering R2401 C1226
Osa07LNT0378300.1 7 nan Resistance or Tolerance Insect resistance RG773 CDO59
Osa07LNT0378300.1 7 qHd-7 Physiological trait Flowering RM125 RM432
Osa07LNT0378300.1 7 nan Physiological trait Flowering R2401 R1440
Osa07LNT0378300.1 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0378300.1 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0378300.1 7 hwd2 Physiological trait Lethality nan nan
Osa07LNT0378300.1 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0378300.1 7 yd7a Morphological trait Panicle/flower R1440 RG128
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus