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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0034500.1

TCACAAAGCTGCTATGTATTAATGTGGTTTATTGCAAGGCAAGCAGACACACAAGCAGACAAGCGGAGACTCTGCCAGATCTGTCTACATATTTACGTTTCGAAAGTGACCAGTAGAAAAATTGCCATCACGTTGTGCATTACACAAAATCTGTATAGAACCTATGATGTTAATCAAGCTATTCTCTTTCTGGACTGGACAACATACATCGGGTCTGTTCGTCCAGGATTAGGAGATATATCAACAGCCTCAGGAGGTTCAAAATCTCCAGCATAATGGAAGTAAGCCCCAACTATCCAAGCGTGATCAGCATCACTGGTTGACGTCCATATAGATATAGCCTTTGTCCAAAAGCAGCGATTTGAAAAACTCATTATGGCCAATCCACTTGGTTTAAGTATTCGTCTCATTTCCTTGAAAACATCAATTGGTTTTGTCAAGTAGTCTACACTAACCACGTTGGTTATAACATCAAATGTGTTATCCTCAAAAGGAAGCTTCGGGTTCACATTGAGGTCTTGCACAACGTACTCTGTTAACACCGGATTCCTTTTCAATTCATCTTCATTCATACCCATCCCCACAATCTTCTCTTGTTTGTACCCAGGTGGATAATGGCTCACCCAGCTGCTGCACATGTCCAGGATGGCCACCCCAGGAGTGTTGCTTGGAGGAAGAACTTCTGAGTAGTATTTCGTGAGAGCCTCGATTGCTTGGTCATCAATGTGAGTCACATAACGGGGAGCCGAGTAGAACAGAGCATCTGATGATTCATCGAAGCGGCTGAAGTCTTCGGCCTTGAATGGGAACTCATCCGGCCACTCAACATTCTTCAAAATCTACAAGCAGCACGCCGTGATTGACATCAGTAGACCTCACACGCGATCGCAAGGGGAAAAAATTGCAATAAATGGACTATGGAATACGACCTGTTCGACCGGGGAAACCCCCTGCCTCGGCCGAGCTGAGGCCACGAACGAGCGTGACGGGGCGCCGCCGGAGGCCATGCGGGCGAGCTGGTCGACGAAAGCGGCGCCGAGGCCCAGGAAGACGCGCCGCGGCCGCGCGGCCTGCGGGGCCACGGGAGCGCCACGGGCACGGGGGCCGGAGGCGCGGGCTCGGGGCGTCCTAAGACGGGGCCTTCTCAGGGCGAGGAGTTCATGGGGGCGTGGCGCGAGCGTGGCCATGGAGGTGGGCGGCGGCCGCGGC

Coding Potentia
Explanation CPC Score
noncoding -1.22312
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0034500.1 1 29599590 A C
Osa01LNT0034500.1 1 29599957 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0034500.1 osa-miR166a-5p Cleavage 5.0 20.175 1 21
Osa01LNT0034500.1 osa-miR166b-5p Translation 4.5 14.22 1 21
Osa01LNT0034500.1 osa-miR166c-5p Cleavage 5.0 20.175 1 20
Osa01LNT0034500.1 osa-miR166c-5p Translation 4.0 14.22 1 20
Osa01LNT0034500.1 osa-miR166e-5p Cleavage 5.0 20.175 1 21
Osa01LNT0034500.1 osa-miR166h-5p Translation 3.5 14.22 1 21
Osa01LNT0034500.1 osa-miR5161 Cleavage 5.0 19.316 1 20
Osa01LNT0034500.1 osa-miR5492 Cleavage 4.0 19.052 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0034500.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0034500.1 1 qHUS-1-2 Others Others RM246 RG101
Osa01LNT0034500.1 1 qLRC-1 Resistance or Tolerance Drought tolerance RM237 RM302
Osa01LNT0034500.1 1 yld1.1 Physiological trait Source activity RM5 RG462
Osa01LNT0034500.1 1 qCC-1 Physiological trait Source activity C122 R1012
Osa01LNT0034500.1 1 nan Morphological trait Root RM3475 RM3494
Osa01LNT0034500.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0034500.1 1 An10 Morphological trait Panicle/flower nan nan
Osa01LNT0034500.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus