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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0379000.2

TCTACACATCGCGCAGCCCCACCCCTCTCCTCGCGCCGCCCCCGATCTTTGCCGGGCGCCCGCCTCCGCGCCGCTACATCACCATCGCCCGGAGTTGCCAGGGTCGTCGTCCTCCGATCTCCTTCGCCCGAGCCGATCTCTCCACCGATTTGCTCCGCTCGTGCCGATCTCTCCCGTCCGCGTCGGCAGTGACGGCCGCCTCGCCGATCTCCTCCGTGCCACCGTCGGTACTCCCTCACCAATCTGCTCCGCCCGCGCCGATCTCTCCCATCCGCGTCGCCAGCGAGGGCCACCCCACCAATCTCCTCCGTGCCACCTCTGGAACACCCGCGCCCGCGTCGCCGACGACCTAGAATTAAGTAGTAGTTGCTAGCTCTGGTTGGCAGCACATACACATTTCATCGAGCACGTCTTGAGCGTTCTAGAATTCTTGAGTGCTCTATATTGTGGTTAGATCAACAAGATGAGAGGCCTCCTGTGATTTACCTGTAGGATCATGTGAGAATACACCAATCTGCAGGAAAAAAAAGTTTAGATTGTCGAAGCAAAGCTGACCGGACACCATGCCAATTGCTATTGTTTACTGCACAATCAAGGAGATTTTTGGCTGATTCTACTAAATTTCTGTTTGGTAAAGTACCTTGGACATACAAGCAGATTTCTCTTTGTGCTGATGTCATGTGCCGAATACTTCGTAACAAGGGAGTTGTGTGGGCTGTTAGGATTCACGTCTCAGTCATTCAGTTTCTATTCTAGATAGCAAAATTTGCTATAGGGCATCCAAAAAACGTGTAATTTCACAATATGTCTGTGATTAAATTAAACTGATTCTCCAAATAAATTACAAGAACTACATCCACGCAGCTTATTAATTTGCATAGGATTACAAATGATTCCGAGCGCCACAGTCAGTCCTACAAGATCAGCGTCGGCAGTCCTCTCTGCCCTGATTAAGGAGTGCATGAACAAGGTTTCCTAAACGGTGTTTTTCCTCGCTCATCCTGAAAGCCCTGATCCTGAAGGTTCATTCCTTCTATTACTGACATCATAACTGAAGCTTGCAACAGTTTATGTGTCATATTAATGCCATTGCTCAGGTACTTTCAGTGAACAGGAAGCTTACTCATAAGGAATCAAACCAATCGTGAAGATAGCGGGTACTCTGAGAATTGACAGAGATGAGAGTCTGGCTAAATAGTCAGCCATGTGAAATGCCTTAATGAACTCTCTATTTCGATAGATGAGATATGTGAAATGCCTTAATGAACTCTGTATTTCGATAGATGAGATAGCTCATTTAGGCAGTACATACATGACGTGGGTTCTTCGATCCATTCAACTCTGTAGTGCTGATCCATTTATAGATATTTCTCCCTTGC

Coding Potentia
Explanation CPC Score
noncoding -1.36491
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0379000.2 7 16427342 G C
Osa07LNT0379000.2 7 16429702 A G
Osa07LNT0379000.2 7 16427168 G C
Osa07LNT0379000.2 7 16427310 T C
Osa07LNT0379000.2 7 16427648 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0379000.2 osa-miR168a-5p Translation 4.0 21.546 1 21
Osa07LNT0379000.2 osa-miR535-5p Translation 4.5 19.274 1 21
Osa07LNT0379000.2 osa-miR444a-5p Cleavage 4.0 18.96 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0379000.2 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0379000.2 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0379000.2 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0379000.2 7 yd7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0379000.2 7 dth7.1 Physiological trait Flowering RM125 RM336
Osa07LNT0379000.2 7 nan Resistance or Tolerance Other disease resistance C1226 R1440
Osa07LNT0379000.2 7 nan Resistance or Tolerance Insect resistance RG773 CDO59
Osa07LNT0379000.2 7 qHd-7 Physiological trait Flowering RM125 RM432
Osa07LNT0379000.2 7 nan Physiological trait Flowering R2401 R1440
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus