>Osa01LNT0034600.2

AACATATTTCCTCCGTCCCAAAATATAAGGGATTTTGGCCGGATGTGATATATCTGGGAGCCTGTCCAGATTCGTAATGCATGCCACATCCAGCCAAAATCTCTTATATTTTTATGGAGGGAATAGTTTGCAACTGATTCCCTAAGGCACAAAATATGTCATTAAGTAGCTGATGAGTTACAGGATAATAAAAGGATTTAGACTTCAAGACAGCCTTAGTCTGGATAATATGTTGTTAAATTGATGTAGAATGGATCCTGTGGCTGAGATCTGGGTCACTGAAGGACGTCACAGTTATGCATGATATTGCTCCAGGCATGATCCAGGGCATTCTCAAGTAACTGCAAGTCCGGAACTTTGTAACCACATAATTTTCTCCCCTTTATCTTCTGGACCCTGGACCCTGGTTGCTGCATCCCCTCTCGGTCCATCGATCCCCAATCGCGTATCGGACGGAGGCTTCGAGTAAATCCGGAACCTTGCACGAATCGGAGGTTTAATGTGTGGCCGGAGATGCTCCCCATGGCGAAAAGCAGAAAATTGCAATTATAGGACTCCAAACAATGCGCTTCGCAGTTATAGGACTCCAATCGTCG

Explanation	CPC Score
noncoding	-1.31504

Transcript ID	Chromosome	Locus	Ref	Alt
Osa01LNT0034600.2	1	29714702	A	T
Osa01LNT0034600.2	1	29714870	G	A
Osa01LNT0034600.2	1	29714938	A	G
Osa01LNT0034600.2	1	29715373	C	T
Osa01LNT0034600.2	1	29714819	C	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa01LNT0034600.2	DTM_#DNAt_MULE_japo_Os1230	Chr1	-	29717432	29718533	61

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0034600.2	1	nan	Physiological trait	Source activity	RG532	RM472
Osa01LNT0034600.2	1	An10	Morphological trait	Panicle/flower	nan	nan
Osa01LNT0034600.2	1	brt1d	Resistance or Tolerance	Drought tolerance	C742	C904
Osa01LNT0034600.2	1	rfw1b	Resistance or Tolerance	Drought tolerance	C813	C955
Osa01LNT0034600.2	1	qHUS-1-2	Others	Others	RM246	RG101
Osa01LNT0034600.2	1	qLRC-1	Resistance or Tolerance	Drought tolerance	RM237	RM302
Osa01LNT0034600.2	1	yld1.1	Physiological trait	Source activity	RM5	RG462
Osa01LNT0034600.2	1	nan	Morphological trait	Root	RM3475	RM3494
Osa01LNT0034600.2	1	qCC-1	Physiological trait	Source activity	C122	R1012

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus