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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0380200.1

AAAAGATGAAAATTACATAAAGCTAGTGGGTATTAATGAAAGTTCTGGCTTGATTTCAATAAACCGGCCAGCAATATTAATAACATGAGCACATATGCCACGTACGGCCGATCGAGCATCAACACAACGAACTAATTAATTATTCAGTTGATGTAATAGTAATAGTAATAGCAGCAGCAGCAGCAGCAGCAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGTTCAGCATTCAGCAGGGGCTTCAGACTTAACAAAAACCTCAAATAACACAGATACGGTACTAAATTACTAGATAATAAATAATTTAGTTATTCGGCTATGCATGACGATACGCGATACGTCCCCATATATAGAACAATGAGTCTGCATGCAAGCTTAGCAATGGCAAATTGTGGTCTCAAACAGAAAGCTTGGATACCAGCTTCTTCTTTGGCCTCAGCTCGTTGGTGTGGCCGCATTTCTTCTTGCGACAGTTGGTAGCCTTGTAGGGAAGGCGCGCGTAGCACTTGCGGCAGATCATCTTCTTCTCCATCTTGCTGCGGGCGAGGGCGAGGAGGTTGGGCTCGATCATCGGGTAGCCCGGGCGGCCGCCGCCGCGGAGGCGAAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTCCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGCGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTGCAGAGACGTGGATCTCGCAAGGCAGTGGTACTAACAAACTTTTGGCTAATTCGATATCGGTGGTGTGGCAACAAGTGTGTGGCGCGGCCTGTGGATGAGATGAGCTGATGATCGAGAGTTTTTATAGGGTTACGAGAGACAAGCAAAACCCTAGCTGCGCAGGCGCAGGAGGAGGAAGAGGCGGGCGGCGGCGGAACGGTTGCCGGATTAATCGAGTGCATGCATGGCATCATCGGCGAGATCAGCGGCCACACGTACCCCGCGCGCGTTGGATCGGATCGGATCGGATCCCCCTGCAACTGCAATTCTTGCATGGCCGCATGTTGCAT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.61216
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0380200.1 7 18133168 C T
Osa07LNT0380200.1 7 18133557 A C
Osa07LNT0380200.1 7 18133718 G A
Osa07LNT0380200.1 7 18134168 A G
Osa07LNT0380200.1 7 18134223 T G
Osa07LNT0380200.1 7 18134295 C T
Osa07LNT0380200.1 7 18135594 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0380200.1 osa-miR5529 Cleavage 5.0 22.514 1 21
Osa07LNT0380200.1 osa-miR5793 Cleavage 5.0 23.866 1 21
Osa07LNT0380200.1 osa-miR5795 Cleavage 3.5 19.36 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0380200.1 7 dth7.1 Physiological trait Flowering RM125 RM336
Osa07LNT0380200.1 7 sp2(t) Morphological trait Panicle/flower nan nan
Osa07LNT0380200.1 7 nan Resistance or Tolerance Insect resistance RG773 CDO59
Osa07LNT0380200.1 7 qHd-7 Physiological trait Flowering RM125 RM432
Osa07LNT0380200.1 7 qLTG-7 Resistance or Tolerance Cold tolerance R1440 R1357
Osa07LNT0380200.1 7 qLTG-7 Physiological trait Germination/dormancy R1440 R1357
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus