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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0380700.1

AAGAACTTCTAATCATTCCGCACCCAACAAATTGGTGCGCTCTATTTAACCTTTTCTTCTGCAAGGGACACAATAGAACACTATATATACTCCTTGTGTATAGATATTAACACCACACCAGCCGTGCAAAAGGATGCTAAATCCTGACATATTGGATGCTTTACGGTTAGGATTTGTTGGTTTTCAAAGTGTACAAGCAAAGAAAGCTCAAACTGCCACGAATGCGACGTCTCTACTCAAAGTCCGGGAATTGCTTCCAGGTTGTACTTCTCTGATGATGTCAGGCCATTCTCTGGGCCCTGCTGTGTTCTTGGTTGCTCCAGCACGTTCAGCTTCTGAAGGTAGGAGTAGGAGGCATTGGGATTTGGCGGTGGGCTCGGGTTGCTTATTTTGCTTGCCAGGAACCGTCTGATGAGTCCTCTGAGGAATGGAGCCATGGTATCTGGCTCATACTCCAGGAAATACATGATTCCCCCCATGCACATGCAGAAAAGAGCCACCTCAGCGTTTTTAATATTTGGGAGCAGATGGCGGTTGATTAATATATACCACAAAGAATCCCCTGCGCGGGGAAGTACATAGAGAGCTAGCTCAGCTCTTCTGGCTTTCTTTTCCAAAAGAATAGAAAGACCAGACATCAGACCAGCAAACCAGTACACAAACTTGTGGTCTTTGGTTGCAACTTTACGATGCAAACAGATGGCAGCCTGGAAGAATGTAACAAAAGCAGACAAAAAGGTCGTAGAGCGAACTGCACCCACAAGAGCTCGCCAACAAGTTGCAGCTGGTGATTCCAAGAACTTTTGAAGGCGTAGAACAACAAATGGGACAAATGTCAATGAGAAATACAGAGGGAATGTTTTCTTGAACGTTGATGAAGAGACACTGACATTATGAGCCAAGCACGATGCTCTGTCAGGATGTATCACAGAACATGGAATAATGGGTGGACTTTTTGTTAAATTTATCAAATTTGAATTCTTCTTGTTAGCTAAATAGGCTGAGAGACCAATGAGATCCACATGACCACCTCTGCAGCAATCTCTTACAGCCTTGTAAACAGGTTCCGCAACTGGTCCAGTCTTTTGGATGAAGTCTTGGTACGATTTAGGTAAGCTTTCAGGCCTCATAACGAAAGAATACATAACCTGGGCAGACGCAAGTGAAAAAAGTAATGCATCTCCATGCCTCCAATGGCTTCCCCAAAAGTGAAATCTGTTCTTAGACTTTGCAGAATTATATGCACACTGGGCAAGCCTTGCCAGAAGATATAGAGAAAGGGTGCGCCTCCTACTTGAATCATCTAGCGCTACTATCGCCAAGCCTGCCACCGAACCTGCTAATATTGCATTAAATGGTGTTTCCTTTTTCCGAAATCTCCGAAGGAAACATCGAAGTGCATGATATGATCCAGTGAATCCTCCAAAAAGTAATCCTACCCGGCAAGCTTCCTCCCTCACTATTAGATCTTTCTCCGAAACCAGTTGCTTGAGGTCGAGGAGGGAGGAGTAGGATCTGCGGCGGGCGAGCTTGAAGGCGCGGAGGAGGATGCCGATGCCGACCCGGACGCCGTAGGAGAGCAGGAAGCTCTGGCACAGGTTCCCCGCCGCGTGCGCCGCGCACGACTCCCCCTCGT

Coding Potentia
Explanation CPC Score
noncoding -1.18528
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0380700.1 7 18503736 A G
Osa07LNT0380700.1 7 18503786 C A
Osa07LNT0380700.1 7 18503889 T C
Osa07LNT0380700.1 7 18504660 A G
Osa07LNT0380700.1 7 18505137 G A
Osa07LNT0380700.1 7 18505166 A G
Osa07LNT0380700.1 7 18505602 A C
Osa07LNT0380700.1 7 18506397 C T
Osa07LNT0380700.1 7 18505175 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0380700.1 osa-miR5833 Cleavage 5.0 20.983 1 21
Osa07LNT0380700.1 osa-miR5072 Cleavage 5.0 23.778 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0380700.1 7 dth7.1 Physiological trait Flowering RM125 RM336
Osa07LNT0380700.1 7 sp2(t) Morphological trait Panicle/flower nan nan
Osa07LNT0380700.1 7 nan Resistance or Tolerance Insect resistance RG773 CDO59
Osa07LNT0380700.1 7 qHd-7 Physiological trait Flowering RM125 RM432
Osa07LNT0380700.1 7 qLTG-7 Physiological trait Germination/dormancy R1440 R1357
Osa07LNT0380700.1 7 qLTG-7 Resistance or Tolerance Cold tolerance R1440 R1357
Osa07LNT0380700.1 7 QRl7 Morphological trait Culm/leaf CDO497 CDO385
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus