© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa07LNT0380900.1
GGTAAACGGACTATCTAAATCATACACGCATAAATAAATGAATACTTGTCCATGTCCAAGGTACCATGTCTGAAAATATACACTTCATGTATATAGAGGCTTTCGAGAGTTTGCTCCCGCTGGACTAGAGGGCTAAACTACTAGTCCCTGGATTTTTACTCTATCTGGATTCTGGGCTAAGCATACAAACACAAAAGGCAGGTACCTGATACCTCCACACACTGGAAACCATTGGGAAAGGGAAAATCCCAGCGCTAAATGGAAGAAAAATAAGCATTTGAGCTCATTGCTCAAAAGTTCTAATGCTCATCTGTGATCATCTCGTCCACCTTATCTTCGTCAGCTGTCTGAGCTGCCGAAACTGGATTTGCCGCACCTGAATTTTCGCTCTCATCAGGGGGCGTCCGTTTCTCCTGGTCGCCGGTGCTTACGGCTTTGCCTGGTACACCCTCTTGGGTTGACTCCTCGTCGCTGGATACGGGCACTACAGCAGGTTCGCTGCTCGTCCCAGGTGCATCAACCAACGGTAATACAGAAAGTTCAGTAGGTGTATTACCTGATCCAGACAATTCGCTCTTCTGATTGTCAGGGTCAGGAGTATCCCTCACAGGTGATCTACAAGATCCAGTATCCATGTCATCTACCGCGGAGAACTCGATTCTGTGAGTACCAGTCTCAGGAGGCTCTGGCCTGGACGGGCAAGTGGCAGCAGCGACAGAAGCAGGTTCTGAAACTTCCATGGTTCTTTCTGGTTCTTCAAAAGTGGAAGGGGTTGACGCATCCTGCCCCCGACTGCCAGCTGATGATGAAGATGGTGAGTTCAAGTTGAGCGAGGGGGTATCACTGCTTTTAATAACTGCAGGAGAGGCAGGTGCGGCTTCCATGGATAGTGGTGCTGACGGAGTAGAGTTGTGGTCACCTTGCCCAACTGTAGTTTTGGAATGATCTACCAGGGAGGAAGCTTGCTGAACTTTGTGAACTCTCCTCTTCTTTGGAGCACTCCTTGGGTCCTTGGGGAGAGAGAGACGAGGTCCTGGAATCGGGAATGGAGGTATTGCTGGTTTTTGCTCTCCAAGTAGTAGGCACACAGACTGAGCAATAGCTGAAACAGTTGCTGGTAGCTCACATTCAGGTGGCTTGGATGGAGGTGCACGCACAGCCTCCTGAAGCCAGTGCGGTAGCTTGTTCGGTTTTGAACTTTCAAAATCACCAGAGTTCTCAGCTAGAGGATCTGACAGCTTTGTGTGATTCAGATTCATCTCAATGGGTAATTTCCCTAACTTCACACGCCGTTGCATCTCATGGAATAATTTGGCCTGTCCGTCCGAAAAACCATGAAGTATGCTCTCATGAGAACTTGATCCAACTTCATTCTGCTGAATGGAATTACTGCTGTGTCTGTTTATGGGCAGTGACCCAATGCTTTCCTTCATAAAAGGATTCGGCATAAATGGTGGGATCAACCCCATATCAGGTTTCTCCCACTTGTCAAGTGGGCCAGGAAAATCTCCACTGTGTCCTGATCTATTTTTGAAATCCTGCCACGGTGTCAGTGATGGACCACCCTCACTTAAATTCATGTAATTAGTGGGCTCAACATGAGAAAATCTGGTTGGTATATCATTGCAACCTAACTGAATGTCAGTTAGGTGGGACTGCAACTTTGGCGGCTCCATCCTCAGTTTGGAAAAGCTACTTCCATTAAGTGCCCGAGACATCATTGCATCCGATATGCCAGGAAATGATGTAGAGTTGGAGCTTCTGGTGGCTGTAGGCATTGGTTCCTCTATAATTTTCTGCTCCTCCAAAATCCATCTTGAGGCCAGCTCTTCATGAGATCGGTGGCTCAAAAACTTCAGCTTTGGATCTCTAAGCATGGCCTCCCAATTTCCTCTTCCATGCCTGCGAACCCCAATCCACAAAGCATCGAGTTCATCTTCTGACCAATAGTCTGGTTTTAAACTCTTCTTCAGGAATTTATTTGAGGCATTCTTCAAGAACTTGCTTGAGGAGTACTGAGCACGCATCATTAATTTGTCCAAGACCTTCTTATGATTTTCAGGCATGGACGAATGGATTTGTTGAACTGGGTTGATTGCCAAACCTGGAAGAAGGCCAGACATATCTGCCATGAACTTGTTCTTCTGCTTTGAAGTTCCAGCAATATCTGCCATAAAGCTTGGTAGAAATGAACTATTTGGCAATTCTGGGACACAATTACGAAGATATTCATTGCTAGTGCCCAAAGACAAGTTGGGAAATAGATCCGGTACTGACTTCAAATGCTTAAGTGGAATACTGTCTTCCAGACTAAAATTAGGAAGACCCAGTTTCCCTTGAAATGAAGGAATGGACGATACAGGATTTTCTACATGATCACCAATCCCCTTCCCGGATATAGGAGGAATAGGTTGGAAGGGGAAGTAACTGTCTGGAATGATATTATTCAGCCTTCGCAAAGTCTCCTCGGAGGAACCAGGAAACATAGGCTTACAAGGAGTTGGTTGGCCATCATGTTTTTGTTCGCTAGAATGATCAACAGCAGGAGTCAACAGCGGTTTGTTGGCTAGTTCACCACTAGCTCTTTTTTGCTCCTTTGTGCTTGGCCCACAAACTGACCCTTTATATGAGTTCATCTGATCAGCATTTGGAGCACAAAGGCCAAGAACAGGTAAAAGGTGATGTGGAGTTCCTGAATTGGAGATATCTGCTGCCTTTGGGTGATGTTTTGATGAAGCAGCATTGCCAGTAAGCTTGGCATAAAGCTCTTGAGGAATTTCAGGATATCTCTTGGTTTTCTTCGAGGATTGCTTCATTTCTGCAGTTGATTCACCGAGACGTTTAGCCCCAGATGGCTGCACAGGATTGGGATCTTCTACAATTCTCAAGGGATTTGCACTGGAATCATATAGTTTCATGAATTCTTCAAGTCTGTCATCAGCATAATTCTTAATCACATGGCGCTGAGCAATCCTTTCCTTTTGTCTAGCTCGGAGTTTTTCATATTTTTCCTTCAAAGCCAGTCCAGCTGCAGTGTATTCTCGCTTTGGTTCATCCTCCTCATCAGAGTCCTCGCTTAAAGCTTCATTAGGAATGGTTGCAAATGTTTCCCTGTAAGAAACAGCCTTCCTTAAACGCTTACCTCGACCAAGAGATGCTTCCTCCTCAGTTTGATACTGCTCCCATCTGACACGTAAGAGTTTATCCCATTCATTTTCTTCAACACGATTAGCTGCATCCTGCTTTGCTTCAGATGCCTGCTCGCAACCATCATTATCAATATTTGGGATGTCCTCGGTGGCACCAGGGTCATCATTCAGCTCATCGTTCCAATCTTTACAGTGCCAAGCATATCATTGTCCAAGTCCCCATCAGTGCTTTCAGCTACTGTTGATGGAACGTTGGATCTGTCAAGAAGCTTTGTGATAGCATTTTCATCCCAAATAAATTTAGCAGAACCATCAGCACATCTGTCTTCATAAACATCGCCTAGTCCACCAGTTTTTCTTTTATGCTTAAACTCAACCTCTGCTACATCATTTTTAGCACCAGAAGCTTCATTATTATCTTTAACTGCAACATCGCTATTCCTGAAGAGTTCCTCTGTTCCCCAGCGAATGATATCTTCCACTTCCTTCTGTGATTCTGATTTGTTAACAAAAAGTTGATCAAGCATCAATTTTTTCTTCGCAAGGTGCAAGATACGCTCCTCAACACTAGCACGCACGACAAGCCTGTAAACTAAAAGTCTGTTTGACTGTCCAATTCTGTGTGCTCTGTTCATTGCCTGTATATCAGCATGTGGATTGAAATCAGAATCATATATGATAACAGTATCTGCAGTTGCCAAATTAATTCCAAGCCCACATGACCGCGTAGATAGCAGGAATACAAAACGACTCTTGTCCTGATTAAAACGAGCAATTGCTGCCTGGCGTTCTGCCACAGATACTGAACCATCCACTCTTTCAAATGTTTTCGGACCAAACTCCCAAGTCAGGTAATCTTCAAGGATGTCAAGAAGCTTTGTCATCTGAGAAAAAATAAGAACTCGATGACCATCCTTGTGTAGGATTTTAAGCATAGAGTGCAACAAAGTTAACTTTGCTGAGGCCTTTATTCGCATTTCATGCAAGAACTCTGGTGATCCTGATTCAGGTTCAGTTCCAGGAATAAGATACGGATGATTGCAGACTTTCCGAAGTTGCATTACTATGTTCAACAATGACTGGTGAGCACCACCTTTCCCAATATTGCGCAATACTTGGTAGTTCTTTGTAAGCATAGCACGGTAGTATTCAGCCTGGATTGATGTCAATTCAACAGGCACCATTCGTTCAGTCTTTGGAGGGATATTTTGCATTGCATCCTTTTTCAGTCTTCGAAGCATATGTGGAGCTACAAGGTTCTTCAGCTCCTCCACTTTCTCTGTTGTTGTAAGGTCATTGAATTTCTCCTCAAATGAAGCTAGAGAAGGGAAAGAAGCAGGTTGTAAGAAGTTCAATAAGTTATACATTTCACCAATGTTATTCTGTAACGGAGTTCCAGTCAGCAAAACTCTATGCTGAAATGATAATGTATTGAGTAAACTGAAAAGTTTGCTGCTAGAATTCTTCAGACGATGACCCTCATCGACTATAAGAACCTCCCATGACACAGACCGAAGATATGCAGCATCAACAAGCACCATTTCATAAGTAGTGAGCAATACATTGAACTTATGAGATTTCTTGATTTTACCCATCTGGCTTGCATCACCCTCATGCCACTCATATTGACGAATAATAGATCTTGCCCGTGCAGAACCATGATACTCCACAACATTTAAATGAGGTGCCCATGATGCAAATTCAGCCATCCAGTTGGGCATAGTAGAAAGAGGAACCAAGACAAGACATGGCAAGTTAATCTTATATTCACAACATAGGGATGATAGAAAAGCACAGGCAGACACAGTCTTTCCAAGACCCATCTCATCAGCAAGGATAACATTTTTTGACTTGTACCAGCATTTGCGTAGCCAGTTCAATGCTTCCAGTTGATGAGGGAAGAGCATGCCTCCCTGGAGTTCTTTTGGCTGCTCAACCAGCATATTAAACTCTTGGTGTTCCCTTGGCTTTGCATGGCTACCTCCCTTATCCTTATCCAAAGCCTGGGATTCAAATTTTTTGAACTGAGTGACCAAATGTGCATACTTCACCATTGTAGGTTCATCTAATCTTTCCCACGTGCATTCGTCATATGGAAGGGCACACCATTTGATCAAAGCCTCTTCTATTTCATCTAAAGAAGTGCGCAGAGCAATAACTCGTTGCGGTTGGCACCATTGTTCTTTGCAGATGTTTATCAAACCTGTTCCGTACTTTGCTTTGTAGTTTTCTAGTTTCCTTTTTGCTAATGCTTTCAGCTCAGATTCAGAAATCCAGCTGTTATGGATATTCGATTTGCCAACCCATTTAACTAAAAACTCATAAGTAGTTCCGTCGTGCTCCTTCAATTCAGTTTCTTGTATTTTCCCATGCAATTTACTATCAGGTGTATGTTCTTGTTTAGTGTGGACTTCTGTGTCAGCTTTGGAAACTGGATGTTTGGTGTCATTCTTTTCTTCTGGAATATCAGTTACTGTCTCATATTCACCATTTACTGAAGCTGTTACATATGTCTGTACTGCTCCAGCATCCTTAACAGTGACGATTTGATCAGCGGAACATGCTGATGCTGTATTCATGATTTCTTTTGCGTTAAGTGATTCCTTGTGTCCATGGGATCTAACATTACTCTCCTTTTGAGCATCAGAACAATCCAAATTATTTTCCCCACCATCGTTTGCTAATTCATCAGCACATGCATCCTCTGTCACATTAGTATCACTATTAGAAGACTGAATTTCTTCATGAAGTCCTTTTAAAAGGGCTTGACTAGGTTCTGGTGCACCGGATGCACTAGGAGGGGCCATATCAATCTGCTCTGATGAAGCATGGGCAGGTGAAATGATTTGGCTTGTCTGAAGTCGACAGCCTAGGATGCGATCAACCTGCAGATCCCCCTGAGTTGTTATTTTGTCTCCTGCACCACCATGCTCCTTTTCAGTTATATGAACAGCATTCTCAGGGTGCTTTTTATCAACAAATTTCACTTTCTTTTTTCCTTTCTTGGTACTTGATGCAGGTGTTCTTCCATCCAACGATTTTCTTTTTGGGGGCGGCGATTCGCTGTGCTCAAGAGAAGTAGATGGTTCCATTGAAGAATCACTGTCCACATCTGATGCCAAATATTGGACCTTTTTTGCTTCGGATCTCTTACTGTCTCTGTGATTGTGTTGCTTCTTGTTCTTATATTTCTTTGGAGATAATTCCATGGGATGCAGATGTTTCTTCACTTTCAAAGCACTTCCGTGTTTCTCCTGTTTCTCTTCTGAAGACTTTCCAAGTAACCCTGACTTTGATGATGTGGTATCTGTAGATAGTTCCTTGGTTGAACGCTTCTTCAAATGTAATATCAATGGTTTCCTTTTCTCAACTTCATTGTCTTTTGCACCTGGTTCATCATCCCTAAATGCAGCACCACGTGATGTGTTAAAAGAGGCTTTGTTTTGTGGAGATGGGGATGGGCTATCTGATGTGGTGCTTGTGCGCATTCTCCTTGTTCTTTCACGTTTAGAGGTGTCAGCATCAGCATTGTCTAAGAGCTTCAAGCTAACTTTTTTTGTACGACATCTTGGGCATTGCCAATTTCCAGGTGGTGCACGCTTGAGAGGAGGATTAAGACATTCCAAGTGGTATGTTCGTGGACAGCTATCACAGCACAGCAAATTGCCACCGAGATCACATTCTACACACTCGTAGAAGTACCCGTCATGTCCTCTTATCTTCTTGGTTGATGGAGAAATGTTAGTGTCATGTTTGATCTTCTTTTTGATGGAGCCATTGTTCATTTGAGAATCCAGTATTGGTGAGGAAGCATCATGCTCACTTGATGGACTAACTGTTAGCTTGCTCCGTTTCCTTTTGTATTTCAAAACCCAACTTCCATCTGCCGCACTTTCACATAAAGAGCTCCGCTCCTTCATCATTAGAGTATCAACGTCACATGCTGTAGCTATTAAACCCCTCCGCTCCAAACAGCCGCAGCCACCTCCCCCGAAATCCGAATCTCCGCCCTAAGCACACGCTCGCGTAGCCCACCCCACCCCAC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa07LNT0380900.1 | 7 | 18628269 | A | G |
| Osa07LNT0380900.1 | 7 | 18629184 | T | G |
| Osa07LNT0380900.1 | 7 | 18629246 | A | C |
| Osa07LNT0380900.1 | 7 | 18629467 | A | G |
| Osa07LNT0380900.1 | 7 | 18630501 | G | A |
| Osa07LNT0380900.1 | 7 | 18631117 | A | C |
| Osa07LNT0380900.1 | 7 | 18631494 | C | T |
| Osa07LNT0380900.1 | 7 | 18632152 | A | C |
| Osa07LNT0380900.1 | 7 | 18632361 | T | A |
| Osa07LNT0380900.1 | 7 | 18634610 | A | G |
| Osa07LNT0380900.1 | 7 | 18634846 | T | G |
| Osa07LNT0380900.1 | 7 | 18635068 | A | T |
| Osa07LNT0380900.1 | 7 | 18635466 | G | A |
| Osa07LNT0380900.1 | 7 | 18636849 | T | G |
| Osa07LNT0380900.1 | 7 | 18638017 | A | G |
| Osa07LNT0380900.1 | 7 | 18638301 | A | G |
| Osa07LNT0380900.1 | 7 | 18638503 | C | T |
| Osa07LNT0380900.1 | 7 | 18638597 | A | T |
| Osa07LNT0380900.1 | 7 | 18626131 | A | G |
| Osa07LNT0380900.1 | 7 | 18626503 | G | A |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa07LNT0380900.1 | osa-miR5541 | Cleavage | 5.0 | 15.686 | 1 | 21 |
| Osa07LNT0380900.1 | osa-miR5543 | Cleavage | 4.0 | 13.421 | 1 | 21 |
| Osa07LNT0380900.1 | osa-miR5543 | Translation | 4.5 | 11.098 | 1 | 21 |
| Osa07LNT0380900.1 | osa-miR5791 | Cleavage | 4.5 | 18.451 | 1 | 21 |
| Osa07LNT0380900.1 | osa-miR5820 | Translation | 5.0 | 10.099 | 1 | 21 |
| Osa07LNT0380900.1 | osa-miR5820 | Cleavage | 4.5 | 20.352 | 1 | 21 |
| Osa07LNT0380900.1 | osa-miR5512b | Cleavage | 5.0 | 19.771 | 1 | 21 |
| Osa07LNT0380900.1 | osa-miR1437b-5p | Translation | 4.0 | 17.512 | 1 | 21 |
| Osa07LNT0380900.1 | osa-miR7693-3p | Translation | 5.0 | 20.54 | 1 | 22 |
| Osa07LNT0380900.1 | osa-miR162a | Translation | 4.5 | 20.039 | 1 | 21 |
| Osa07LNT0380900.1 | osa-miR395f | Translation | 4.0 | 13.126 | 1 | 21 |
| Osa07LNT0380900.1 | osa-miR162b | Translation | 5.0 | 20.039 | 1 | 21 |
| Osa07LNT0380900.1 | osa-miR172a | Translation | 5.0 | 16.322 | 1 | 21 |
| Osa07LNT0380900.1 | osa-miR172c | Cleavage | 5.0 | 15.287 | 1 | 21 |
| Osa07LNT0380900.1 | osa-miR393b-3p | Cleavage | 5.0 | 14.423 | 1 | 21 |
| Osa07LNT0380900.1 | osa-miR172d-3p | Translation | 5.0 | 16.322 | 1 | 21 |
| Osa07LNT0380900.1 | osa-miR415 | Cleavage | 5.0 | 14.378 | 1 | 21 |
| Osa07LNT0380900.1 | osa-miR1849 | Cleavage | 4.0 | 20.091 | 1 | 21 |
| Osa07LNT0380900.1 | osa-miR1850.3 | Translation | 3.0 | 19.398 | 1 | 22 |
| Osa07LNT0380900.1 | osa-miR1853-3p | Translation | 5.0 | 6.99 | 1 | 22 |
| Osa07LNT0380900.1 | osa-miR1854-5p | Cleavage | 4.0 | 13.608 | 1 | 21 |
| Osa07LNT0380900.1 | osa-miR1854-5p | Translation | 4.5 | 11.55 | 1 | 21 |
| Osa07LNT0380900.1 | osa-miR1857-3p | Translation | 5.0 | 22.19 | 1 | 21 |
| Osa07LNT0380900.1 | osa-miR1866-5p | Translation | 4.0 | 11.464 | 1 | 24 |
| Osa07LNT0380900.1 | osa-miR1862d | Translation | 4.0 | 16.197 | 1 | 24 |
| Osa07LNT0380900.1 | osa-miR1862e | Translation | 4.0 | 15.883 | 1 | 24 |
| Osa07LNT0380900.1 | osa-miR1883a | Cleavage | 4.0 | 20.831 | 1 | 24 |
| Osa07LNT0380900.1 | osa-miR1883b | Cleavage | 4.0 | 20.831 | 1 | 24 |
| Osa07LNT0380900.1 | osa-miR1320-5p | Cleavage | 4.0 | 12.281 | 1 | 21 |
| Osa07LNT0380900.1 | osa-miR1320-5p | Cleavage | 4.5 | 10.578 | 1 | 21 |
| Osa07LNT0380900.1 | osa-miR827 | Translation | 4.0 | 14.036 | 1 | 21 |
| Osa07LNT0380900.1 | osa-miR2092-3p | Cleavage | 4.5 | 23.534 | 1 | 22 |
| Osa07LNT0380900.1 | osa-miR2097-5p | Translation | 5.0 | 12.534 | 1 | 22 |
| Osa07LNT0380900.1 | osa-miR2864.2 | Cleavage | 5.0 | 15.08 | 1 | 21 |
| Osa07LNT0380900.1 | osa-miR2874 | Cleavage | 4.5 | 14.068 | 1 | 24 |
| Osa07LNT0380900.1 | osa-miR2878-5p | Translation | 5.0 | 20.585 | 1 | 24 |
| Osa07LNT0380900.1 | osa-miR2879 | Translation | 3.5 | 15.594 | 1 | 24 |
| Osa07LNT0380900.1 | osa-miR2920 | Cleavage | 5.0 | 13.847 | 1 | 23 |
| Osa07LNT0380900.1 | osa-miR5076 | Cleavage | 5.0 | 13.323 | 1 | 22 |
| Osa07LNT0380900.1 | osa-miR5080 | Translation | 5.0 | 21.105 | 1 | 21 |
| Osa07LNT0380900.1 | osa-miR5492 | Translation | 4.0 | 14.667 | 1 | 21 |
| Osa07LNT0380900.1 | osa-miR5512a | Cleavage | 5.0 | 19.771 | 1 | 21 |
| Osa07LNT0380900.1 | osa-miR3979-5p | Cleavage | 4.5 | 22.654 | 1 | 20 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa07LNT0380900.1 | 7 | qHd-7 | Physiological trait | Flowering | RM125 | RM432 |
| Osa07LNT0380900.1 | 7 | qLTG-7 | Resistance or Tolerance | Cold tolerance | R1440 | R1357 |
| Osa07LNT0380900.1 | 7 | nan | Resistance or Tolerance | Insect resistance | RG773 | CDO59 |
| Osa07LNT0380900.1 | 7 | qLTG-7 | Physiological trait | Germination/dormancy | R1440 | R1357 |
| Osa07LNT0380900.1 | 7 | QRl7 | Morphological trait | Culm/leaf | CDO497 | CDO385 |
| Osa07LNT0380900.1 | 7 | dth7.1 | Physiological trait | Flowering | RM125 | RM336 |
| Osa07LNT0380900.1 | 7 | sp2(t) | Morphological trait | Panicle/flower | nan | nan |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)