>Osa07LNT0381000.1

CGATCGATCAGATCCAGTGATTCAGAACTCAAAACATTCAGTTAATGTCATCACTCATTAGAATTCAGAATCACGCACATTTCTAATTTCTAACAGTAATAGTATATTGCAGGAGTTAATTAACCAAAATTCCCAAATGGAAAGACAGGGAACACCCTGAATAGCATCATGACAATTCTTCACCATATTCAGTTGCTGTCATCATTCATCAGAATTCAGAACATCATGCATATTTCTATCTAGTTAAGCATGAACAGTAATATATTTCAGGATTAAGCACATTCTTTTCAGGACTTCATCACTAATCAATCTAGCTTCGCCTTCCTCCGGTCCCTCTGGTAGCAATCCATCGACATTTGGGAATATCAACTGATTATCCGCGGCGAGAAGGCGGCGGAGAGCGTGGACGTCGGATGGGAAGCGGTCGCCGTCGCCGTTGACGTCGGTGCGCCGCCGCGCCGTTTCCTCGCTTCTCCTCTCGCGTCGCCTCGCGTCCGGATT

Explanation	CPC Score
noncoding	-1.29077

Transcript ID	Chromosome	Locus	Ref	Alt
Osa07LNT0381000.1	7	19093019	A	C
Osa07LNT0381000.1	7	19093485	G	C
Osa07LNT0381000.1	7	19093606	T	G
Osa07LNT0381000.1	7	19093973	T	G
Osa07LNT0381000.1	7	19093908	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa07LNT0381000.1	osa-miR1319b	Cleavage	5.0	8.971	1	24
Osa07LNT0381000.1	osa-miR5152-5p	Translation	3.5	11.804	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa07LNT0381000.1	7	qHd-7	Physiological trait	Flowering	RM125	RM432
Osa07LNT0381000.1	7	dth7.1	Physiological trait	Flowering	RM125	RM336
Osa07LNT0381000.1	7	qLTG-7	Resistance or Tolerance	Cold tolerance	R1440	R1357
Osa07LNT0381000.1	7	qLTG-7	Physiological trait	Germination/dormancy	R1440	R1357
Osa07LNT0381000.1	7	QRl7	Morphological trait	Culm/leaf	CDO497	CDO385
Osa07LNT0381000.1	7	sp2(t)	Morphological trait	Panicle/flower	nan	nan
Osa07LNT0381000.1	7	nan	Resistance or Tolerance	Insect resistance	RG773	CDO59

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus