© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa07LNT0381200.1
AAATCTAGCGTAGTCATCAAATCCATAGTAGTCAAATCAAATGCTACATAACCTGAATTCAACGATCAACGACATACATAGGAGTAAGTACCAGTACCAGAGCTCTTCGACCGTCTGCCTAAGCCTAACACACATGACACATGGACACCGAACACAACCGTAGTTCACTGCAAAGGTAGCACTACTGGTAGGCTAGTAGCAAAGCTGATGAGAGCAGCGGCCGCAGATTCACAGCACGATGGGGTCGGACGACTGCGAGCCCTTCCCTCCCACGCGCCTGAACCTCTTCGCCTGCACGCAGCTCCGGCTGCTCCGCCGCACCGCGCCGCCGCCGCCGCCTGATCCCTTCGCCGCCCCGTCCTCCTCCTCCCGCCGCCGCCGCCGCCGCCACTTCTGCTCCTCCTCCTCCTCCTCCTCCTCATCCTGCTGCTGCTGCTCATCAGACCGCTCCTTCGGCGGCACGGCGTCGTCGTCGTCGGCGTCGCCGCGCACGATCCCCGGAGCCTCCGCGTCCCCCGTGCCATGCGGCGCTTCCTGCTCGCGCGGTGGCATCACAGCCAGGGGAGGGATCACCGCGATCACCTGGGGCTGGGGCTGTGGCGCGGCGTCGCCTCGCTTAAGCGGCGGAGCAGGAGGGGAGGCCTCGATGAGACCGCGGATCCTGGACAGGGACGTCGCCAGCTCGGCGGGGAGGCGGTGTTGCTCCAGAAACCGCGCGACGGTCGGGAGCTCCTCCCTGACGCCCTCCACCTGCATGAACCGATCCAATCGATCACAACAACGAAACGCACGATGCAATCACCCGAACTGAACCGCGATGACACGCTCACGTCAATGTGACAGCTTCCTCAGCACGAGTGTTAGGGAGATGGATTCTAATCTAATCACTCGGTGCATGTCCACACGTTTATTATACGTTAGCTATATGACTATGATTTTTTTAAAAAAAATGACAAGATAGATTGATAACAAACATGCCAGCAAATTCGACTTCTGTAAGTTGTAACAATGATAACAAAGTTAATTGCGAATATATCTATACTAATTAAAATTTAATTTGCTACTTTTATTACAATTTAAATAAGTAAAATTTGAGCTTGCATATTTGTAGGATAACATATTATTACATATGAATCTACCTTGTTATTTTTTTTTTAATTTTTTTATAACCATTTAGTTGATAGTATGTAGCAAAAGGGTAGATGTCCACCTAAGTGATTAAAAGTGTTTCACCGACAGGTAGTTTTACCACGGATATCAGGCTGAGCCCAAGGGAAGCTCGCGCCATGGTCGCCGGAGTGAAAACATCTGCGGCGGCGGCGGCGGCGGCATCTGCTGTATGACCATGATCACCACCATCTGCAGCGTTGATCAGCTGCTGGAACCGTTCGATCTCTGAAGCGTACATCAGGCTCCAGTCCACTGCCGGGTTCCACAGCTGCCGCTGGAACGCGGGGACATCGTTGAGCGGGCGATGCTGTTCTTGCCCAAACTGGCGAGCGAACCGGTCCGGGGCGTAGATTTCCTTGAGGTTGAAGCTGACCAGCCATGTTCTGGAGAAGCAGAGGTTATCCGGAGCAGCGCAATGCTTCGGAATGGATGCAGGATCAACGCCCTTGTAGGGCTCCCAGTTGACATCAGAAACTTGAAGCAGGCCGAAGGCTTTCCTGATGTCTGAAACGTTCTTGGCCGGTTGAGAGATCGTGCTCCCTGTCCACTTGAGTACTCGTGGGAAGATGTGTTCTGGAGGATCATACATGTCAGGGCGCAATGCCGGAATATACTCATATATCCAGCCCATGAGCAAAGCCGCGCTACCGAATAGCCTTTTTCTGGCAGAATGGGCCACGGCGATGGAGAGAGCCTTGTAGAGATGAGCAAGAGCAGCAGCACCCCAAGCATATTCCTGTACCTTGTCAAAGTCTGACAGAAGTGGCAAATACTTTGGTGAGACATAGCCCCTGTCCCTCTCTGGAAGTAAGGCTGATCCAATCAAGAACAGGAGATATGCCCTGGTGCCATACATGGTCTGATCATTGGTGGGGCGTTCCGGGATCCGGCTAAACTTGGATTGCAGCCAAGAGAGCTTCACATGGCTGCCCCTGCAGTCCCTGCAATCAGGCACTTGCCCCAGATACTGGAAGCAGAGGTCTTCGACCGACTTGTTGAGCACAGCTCCGGTTGTCACCACACGGCCTGTCACCGGAATCCCCAGTATGTAGGCGGCGTCCCTGAGTGAGGGTGCCATTTCAAAGCCATTGAGCTGAGCAGTGTTGGTCTCCTTGCTCCACAGTTCGAAGAATGCCATGAGCGCGATGCGATCGATGACTAGGCCTGCTGTGTGTATCAGGTTGCCGAGCCCGCTTGCATCGACCAATTGTTGCTGCTGCTCATTCAGCTTCCATGTGTCGAGTCTCTCCGTCGTCTGGCATACGGTTAGTTCATGGGTTCCCTGAATGACGCTTTTGTTTGTTGGTTCTGCCTCTGCGGATTCCATCAGGATCAATGAGTAGCCGCAGCAGCGAGCGAGAGGCAACAAGAGCACAGCAAAGAAGGCGAAGAGCTTCTTCTATGCAGGCGAGCGTTGGTTGGGC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa07LNT0381200.1 | 7 | 19271820 | T | C |
| Osa07LNT0381200.1 | 7 | 19272409 | G | T |
| Osa07LNT0381200.1 | 7 | 19272754 | T | A |
| Osa07LNT0381200.1 | 7 | 19272755 | T | A |
| Osa07LNT0381200.1 | 7 | 19272822 | A | G |
| Osa07LNT0381200.1 | 7 | 19272923 | A | G |
| Osa07LNT0381200.1 | 7 | 19272938 | T | C |
| Osa07LNT0381200.1 | 7 | 19273927 | T | C |
| Osa07LNT0381200.1 | 7 | 19274468 | T | C |
| Osa07LNT0381200.1 | 7 | 19274779 | C | G |
| Osa07LNT0381200.1 | 7 | 19274849 | T | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa07LNT0381200.1 | osa-miR171a | Translation | 4.5 | 16.513 | 1 | 21 |
| Osa07LNT0381200.1 | osa-miR393b-3p | Translation | 4.5 | 24.158 | 1 | 21 |
| Osa07LNT0381200.1 | osa-miR419 | Cleavage | 5.0 | 21.939 | 1 | 21 |
| Osa07LNT0381200.1 | osa-miR444b.1 | Translation | 3.0 | 24.83 | 1 | 21 |
| Osa07LNT0381200.1 | osa-miR444c.1 | Translation | 3.0 | 24.83 | 1 | 21 |
| Osa07LNT0381200.1 | osa-miR1846a-5p | Cleavage | 5.0 | 17.219 | 1 | 21 |
| Osa07LNT0381200.1 | osa-miR1846b-5p | Cleavage | 5.0 | 17.219 | 1 | 21 |
| Osa07LNT0381200.1 | osa-miR1846c-5p | Cleavage | 5.0 | 17.219 | 1 | 21 |
| Osa07LNT0381200.1 | osa-miR2865 | Translation | 5.0 | 23.277 | 1 | 22 |
| Osa07LNT0381200.1 | osa-miR5337a | Cleavage | 4.5 | 15.979 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa07LNT0381200.1 | 7 | qHd-7 | Physiological trait | Flowering | RM125 | RM432 |
| Osa07LNT0381200.1 | 7 | QRl7 | Morphological trait | Culm/leaf | CDO497 | CDO385 |
| Osa07LNT0381200.1 | 7 | qLTG-7 | Resistance or Tolerance | Cold tolerance | R1440 | R1357 |
| Osa07LNT0381200.1 | 7 | qLTG-7 | Physiological trait | Germination/dormancy | R1440 | R1357 |
| Osa07LNT0381200.1 | 7 | dth7.1 | Physiological trait | Flowering | RM125 | RM336 |
| Osa07LNT0381200.1 | 7 | nan | Resistance or Tolerance | Insect resistance | RG773 | CDO59 |
| Osa07LNT0381200.1 | 7 | sp2(t) | Morphological trait | Panicle/flower | nan | nan |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)