© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa07LNT0382900.1
ACTACTCTGTAAAAGAGGATGGAGGCATAAACATCACGATCGGAAGCAGACAAGGCACACGATTCGTACCAACAAGAAAGAAAATATCCTGTGCTCGTACAAATTAGTAATAGAAATATCTAATCTCTCCCAGGAAATAGTACTACTTCCTGCTAATGGTTGAGTAGTGGGCACTGACAGGCGATCAGCTACCGGCCTTCTTGTTGTCGACATCGGAGCAGGGTTAGCCTTTCATTGATCATATATTGTCCGCATACCGCTTAGCTAACCATGGCGCGGCCAGACTGAACCATACACGTCCTTCTTTGTGTACCTCTTGTCCCAAGACCATGGGACATCTTCTGTGCCGTAAGGCTTTGGAGGAAGTTGATATGGCACTGGCAATCTGATAATTTCCGTGGATTGTTCTTTTTCTTCGTCGCTTTTCCAGCAGAGTGTGACCAGTTTGGTTTTGATCTCTTTCCCAGGGGCCAGGTTATTCAGGTTTGAATTGTTCTTCCCCGTACATGAAAATTGTGGTACAGATTGGTGAGTTTTGGGCAAGAACAGTACACCTAACTCATATGAGCGTATCATCAGTTGTGTATTATTCTTCTGCAACGCACCCCAAGCAGCTTTGCTTAAATTTGCCGAGGTTAGTAGAAACCATGCAATGTCTTGACCATTGTATCGAGTAAAAGTTTTTATGTGAGGCATCGCACGACAACGACCCACATGGTCCGCTTTCCACCTGGCCCAATACTTCCTCAAGAAATCTTTTTCAACATTCTTTTGAGGGCTTGGAATGCAACTACCAGCTGCATAACCCTCTATTGATGTCCTAACATCCTCCACTGTAGGCCAGACAATCAGTGGTTTACCAATACCCAAAGGTGAACCATTATCTGATTTACCAGCTGATAGTGAGAATGCAAACTCACTCATCCATTTCTCATCAAGTGACCCCAAGGAAGAGAACTGATAAATCATGGGAGCCTTGCAAAACTGTTGTTCAAATGTGCACCCTTCAAGAACACTCCTAAGCTTCATATGACCCCACTTTTTAATATTGGGGCCAACATGATAACCAGGAACGGATCCAATCAACCTGACCGATGAGCTCTTATAATCAAACTTCCTAAAGAATGCTGCATTGATGTTGACATCACCAACCACTGGTAAATTTACCCTGAACTCAGGCCACTTAATTGCACTCAGATAATCAACCAAATCGTTTTCAAAGGAAACACTTCTATTCACATCTTTTGCATCTTTCCAGGGAAAATCTTGCATCCATAGCCCCTGAGTTTTGTTATTCCAGTCGACATGTATCAAATTTGCTGTGTGCACAACAACACGAATCCCTTGAGGATATACAAGCAGCATGGCCTTTGAATGATGTGTTCCAAATGAAATTGGAAGTGGAGGCTTGTGAAGGATCCAATTGGCTGGCTTCACTTTCTTCAGAAGCTCCACTGATGCACCATCTTCTCCATGTATAACTAGGACATGTCGAACTTTCCTTAAGCTTGGACATGCTGTAAGCAGCCATTCCATGTCCACCATATAATTTGAGAGTACAGCAAGAAGCACTTCACCCTAATAATTCATTCATCATGTAAGAACTAGTATACTTCTTTGATGAATCTGTATGACATCTTGAATGGTAACTGAGGAAGTATTAGTCCATGAAGGAAGACCTTGGACACGCATGAGCCGAAAAGTCAATGAAAGTACATCTTTCAGATAATCAACAGAGTGTATTCTCTCGTTATTTCTCTCAGAAAAACCAGCACTATCAAGTGAACTTAACATTTGATCACAACCCAAACCGGAAATAGTTGAACTTTCTTCTGCAAAGCTTTTCTGTAAACTTCTTGCCAAAGCCTCATCTTCCATAATCTGACGATTTCTTTTGATAACTACAGTATCATCCTCACAGAGCCTCTTCCCCTTTTTAAAATCACTTGAACCCATTGATGTGGAACTTTTATGGTTATCGCCCACATTCAAATACTTCACAAAATATTCACCAGGGATGAGTTCCAGGACATCATCATGTGCAATCTTTACTCTCTCTTGAGCACAGACCTTCCTCCTCTGGCCCTCAGATCGAACAATGATAGGATTTGGTCCTTCCACTACCGCTTCAATGGAACCATCCGCCGAGGCATGTAGGCTCAGATGCTTGCGGCTGACTCTCTTGTCGACGACCACCAAATGATTCCTCCCTACAACATTGGCACCCAGATAGATAGGAATGCTTGACACCGATCCATTTGACGAGCTCGCATTTCCTTCATTGAGGGGGACTAGATTGCCAACCCTTACTCGAGACGAGGACGTCATGGGCGCGGTCTGGGATTGACTCCAAACCCTAAACCCTAGTCCCCCACATTGGAATCCTACCCAGCGCAATGGGGAGGAGGATGGGGAAGGGAAAGAG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa07LNT0382900.1 | 7 | 20739868 | G | A |
| Osa07LNT0382900.1 | 7 | 20740102 | T | A |
| Osa07LNT0382900.1 | 7 | 20741028 | C | A |
| Osa07LNT0382900.1 | 7 | 20741048 | G | A |
| Osa07LNT0382900.1 | 7 | 20741727 | C | T |
| Osa07LNT0382900.1 | 7 | 20741838 | C | T |
| Osa07LNT0382900.1 | 7 | 20741948 | T | C |
| Osa07LNT0382900.1 | 7 | 20741713 | T | C |
| Osa07LNT0382900.1 | 7 | 20742045 | A | G |
| Osa07LNT0382900.1 | 7 | 20742119 | T | G |
| Osa07LNT0382900.1 | 7 | 20742160 | T | C |
| Osa07LNT0382900.1 | 7 | 20742230 | C | T |
| Osa07LNT0382900.1 | 7 | 20742349 | G | C |
| Osa07LNT0382900.1 | 7 | 20742540 | T | C |
| Osa07LNT0382900.1 | 7 | 20742628 | C | G |
| Osa07LNT0382900.1 | 7 | 20742923 | A | G |
| Osa07LNT0382900.1 | 7 | 20743355 | A | T |
| Osa07LNT0382900.1 | 7 | 20743442 | T | C |
| Osa07LNT0382900.1 | 7 | 20745206 | G | A |
| Osa07LNT0382900.1 | 7 | 20745239 | A | G |
| Osa07LNT0382900.1 | 7 | 20745955 | A | C |
| Osa07LNT0382900.1 | 7 | 20746006 | A | C |
| Osa07LNT0382900.1 | 7 | 20747514 | T | C |
| Osa07LNT0382900.1 | 7 | 20747709 | C | A |
| Osa07LNT0382900.1 | 7 | 20748795 | G | T |
| Osa07LNT0382900.1 | 7 | 20748899 | A | C |
| Osa07LNT0382900.1 | 7 | 20749356 | C | T |
| Osa07LNT0382900.1 | 7 | 20749418 | G | A |
| Osa07LNT0382900.1 | 7 | 20748209 | A | G |
| Osa07LNT0382900.1 | 7 | 20741017 | A | G |
| Osa07LNT0382900.1 | 7 | 20741476 | A | C |
| Osa07LNT0382900.1 | 7 | 20747328 | T | G |
| Osa07LNT0382900.1 | 7 | 20748193 | C | G |
| Osa07LNT0382900.1 | 7 | 20744188 | G | A |
| Osa07LNT0382900.1 | 7 | 20744222 | T | G |
| Osa07LNT0382900.1 | 7 | 20744267 | C | T |
| Osa07LNT0382900.1 | 7 | 20744405 | T | C |
| Osa07LNT0382900.1 | 7 | 20744799 | T | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa07LNT0382900.1 | osa-miR5143b | Translation | 4.0 | 18.154 | 1 | 24 |
| Osa07LNT0382900.1 | osa-miR395f | Translation | 4.0 | 15.626 | 1 | 21 |
| Osa07LNT0382900.1 | osa-miR160f-3p | Translation | 5.0 | 17.271 | 1 | 21 |
| Osa07LNT0382900.1 | osa-miR535-5p | Cleavage | 5.0 | 13.77 | 1 | 21 |
| Osa07LNT0382900.1 | osa-miR444f | Cleavage | 5.0 | 22.626 | 1 | 21 |
| Osa07LNT0382900.1 | osa-miR1860-3p | Translation | 5.0 | 16.492 | 1 | 22 |
| Osa07LNT0382900.1 | osa-miR1860-3p | Translation | 4.5 | 14.277 | 1 | 22 |
| Osa07LNT0382900.1 | osa-miR2055 | Cleavage | 4.5 | 11.581 | 1 | 21 |
| Osa07LNT0382900.1 | osa-miR2055 | Translation | 5.0 | 9.968 | 1 | 21 |
| Osa07LNT0382900.1 | osa-miR1846e | Cleavage | 3.0 | 22.728 | 1 | 20 |
| Osa07LNT0382900.1 | osa-miR5143a | Translation | 4.0 | 18.154 | 1 | 24 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa07LNT0382900.1 | 7 | qSDS-7-2 | Physiological trait | Germination/dormancy | RM320 | RM234 |
| Osa07LNT0382900.1 | 7 | sp2(t) | Morphological trait | Panicle/flower | nan | nan |
| Osa07LNT0382900.1 | 7 | nan | Resistance or Tolerance | Insect resistance | RG773 | CDO59 |
| Osa07LNT0382900.1 | 7 | qLTG-7 | Physiological trait | Germination/dormancy | R1440 | R1357 |
| Osa07LNT0382900.1 | 7 | qLTG-7 | Resistance or Tolerance | Cold tolerance | R1440 | R1357 |
| Osa07LNT0382900.1 | 7 | Ph7a | Morphological trait | Dwarf | RG650 | C285 |
| Osa07LNT0382900.1 | 7 | QRl7 | Morphological trait | Culm/leaf | CDO497 | CDO385 |
| Osa07LNT0382900.1 | 7 | Ra7a | Others | Others | RG650 | C285 |
| Osa07LNT0382900.1 | 7 | dth7.1 | Physiological trait | Flowering | RM125 | RM336 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)