© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa07LNT0383300.1
GCTTCTATTAAAAAGAGCAATTTTACAGTGCTTGAGGAGGTTCCATGAGTTACCAAAAATTTAATGTAAAATTTGGTACCTCATATTACCTAGGTAACAAATTTACAATAGAAAAAGTAAAACCTCATGTAATCTCTTCAAGGACCGTAAAATTACTCTCTATTACAAAAGTTTACAAATATTTTGAAATCACTGGTTTGTAGCACAGGAACTCAGGCTCCATGGAGCCACTGAACCACAAGTTTTCAGTATATTTTGCTGTCTTTGATTCTTTTGGTAATCAGTCTGGTACATTGCGTTATATACTTATGAAAGCCTAACCTAACCTGGCAAAGAATGCTTCAGCGGAATGGCAGATCCCACACAGCGAGCACAGTTTCACCGTTGCACACTTCTACAGTTACTTGCCTTGCACCGACGCCGCCGTCGACGTACCAGACGACGTGCCCCCCGAGCTGGCACCGGCACCGCCGGTGCCGCCGTTCCTCCTGGCACAGAACGCCGGCTTGGACGGCGCCCTGAGCGACACCGTGTCGCTGCCGAGCATCATCACCACCGACGACATCACCGGCCGATCCGCAGGGTTCTCCTGCACGCAGAGCAGACCGATGTGGATGCACCGCATCACGTCGCTCCACGAGAAACCGCCGCCCATCACCGGGTCGACCGCCTCCGACACCGCCCTCGCCGTCCACTGCTCCCACACAAGGGTTAAGAGGTCTTCGGATTGCAGGGAGTTGTAGCAGTCGTTGTTCTTCTTCCCCGTCACGATCTCCAGCACCATGACGCCGAAGCTGAACACGTCGGACTTGAGGGAGTAGTTGCCTCGCATCGCATATTCCGGTGACATGTACCCATATGTGCCGATGACGAGGTTGGTGACCCCCTGCGTCTGGTCTCGCCCGAAGAGCCTCGCGAGCCCAAAGTCAGAGATCTTCGGGTTCATGTTCATGTCGAGCAAGATGTTGCTCGCTTTGAGATCACGGTGGACTACCTTGAGCTGCGAGTCCTCGTGGAGGTATTGCAGGCCACGAGCAATGCCGTTGATGATCTTGTACCTCTTTCCCCAATCAAGCTGTTGACGCTTGTCGGCGTCAAAGAGGATCTGATCGAGGCTGCGGTTGGGAACAAACTCATAGACGAGAAGCCTCTCCTCTTGCTCCAGGCAGACACCGACAAGCCTGACAAGATTCTTGTGCTGGAGCTTTGCAACCAATGCGAGCTCGTTCTTCAGCTCTCCCACTCCTTGTGCTGAACTCTTCGATAATCTCTTCACTGCTATTTCATCGCCATCAGGCAGAGTACCCTTGTACACTGCACCAAATCCACCTTCGCCAAGCTTGTTGCGTTCTGCAAAACACCCTGTAGCAGCTCGTAAAGTCGAAATGTCGATAAGCATCGACTCCACACTTGAAATATTCTCCGATTCAGCAGAGTTGCTGGAATATGGCTGAGTTGCTCCTGATCGTAGCCTCTCCATCCTCCTCCAGAAGCAGAGCCAAACTAGAATGTTGATTAGCACTAAAGCTGCTATAGTAGGCAGCAAAATTGCTAGAACCAAGCGAGGAACATTGTAATCTTTCCCTTCTCCGGCCGCCGCCGCGGCAGCGGCGGGCGGTGATGCTGTCGGAATCGGTGGCGCAGTCAGATGCACCATCACCAGGCCATTGAGGAAGGGGTTTACCTCGTACCGGTAGCTGCACCTGACTCCAAGAACCCTGCCGCCGATGCGGTTCGTGAACAACCTCGGCAGCTTGGCTATGATGGCGGCGAGGCAGTCGCCGCACTGCGCCGGCGTCAGGTCCGGCGTGCACTGCGCCCAGCTGTACACCTTGGGGAACTCCGACTCCCTGTCGAGGACGGCCTCGCCGGACGCGTACCGGCGGGTGGAGTTGTGCGCGGCGTAGTCGGCGGTGGCGTTCACCAGCGCCGCCACCATGCCGTTGAACCTGCCCGGGTCCGACGTGACGTTCTGCAGGTTGACGCGGCTCGTCGAGGCGGCGTTGTCGACGGAGGAGAGGAAGGGGACGTTGGAGTAGTAGAGGATGCAAGGGTCGTAGTAGATGGCGGCGTCCTTGTCGTAGGCGCACATGTTCTGCACGTCCTGGAACGCCGTGGCGAGGCAGCCGGAGCACTCCGTGGCGTTGGCGTCCCCGCGGCACAGCGCCAGCGCCGACACCTGCTCCGGCACGGCGCCCACCATGGCGGTCGCGAAGAGGTCCGGCGACGACGAGATGTTCCGGGGCAGCGCCGCCGCGACGGCGTCGAGGTTGGCCTGGTACGTGCTGTTGGCCGTGAAGTTGCCCGTCGTGCCGCACACCTGCCACGGGTACGCCGCGCCACGCGGCGCCAGCGCCAGCAGCACGACGGCGGCGGTGAGCAGCATCGAGAGGCAGCCAGCGCGATGCGCCATGGACACAGCTGACACTTCCGACACGGAAATGCCGACCTCAGCCAATTGGCAATGCAAGTTGCTGT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa07LNT0383300.1 | 7 | 21133087 | A | T |
| Osa07LNT0383300.1 | 7 | 21133105 | A | G |
| Osa07LNT0383300.1 | 7 | 21133426 | T | C |
| Osa07LNT0383300.1 | 7 | 21133828 | A | G |
| Osa07LNT0383300.1 | 7 | 21134238 | A | G |
| Osa07LNT0383300.1 | 7 | 21134507 | G | A |
| Osa07LNT0383300.1 | 7 | 21134694 | C | A |
| Osa07LNT0383300.1 | 7 | 21135208 | T | G |
| Osa07LNT0383300.1 | 7 | 21135808 | T | G |
| Osa07LNT0383300.1 | 7 | 21135836 | T | G |
| Osa07LNT0383300.1 | 7 | 21135941 | T | C |
| Osa07LNT0383300.1 | 7 | 21135991 | T | G |
| Osa07LNT0383300.1 | 7 | 21136041 | A | G |
| Osa07LNT0383300.1 | 7 | 21136083 | G | A |
| Osa07LNT0383300.1 | 7 | 21139074 | G | A |
| Osa07LNT0383300.1 | 7 | 21139091 | G | A |
| Osa07LNT0383300.1 | 7 | 21139391 | G | A |
| Osa07LNT0383300.1 | 7 | 21139429 | T | C |
| Osa07LNT0383300.1 | 7 | 21140019 | T | C |
| Osa07LNT0383300.1 | 7 | 21140079 | A | G |
| Osa07LNT0383300.1 | 7 | 21140098 | C | T |
| Osa07LNT0383300.1 | 7 | 21140176 | C | T |
| Osa07LNT0383300.1 | 7 | 21140443 | T | C |
| Osa07LNT0383300.1 | 7 | 21140495 | T | C |
| Osa07LNT0383300.1 | 7 | 21140650 | A | G |
| Osa07LNT0383300.1 | 7 | 21140718 | A | C |
| Osa07LNT0383300.1 | 7 | 21133184 | T | C |
| Osa07LNT0383300.1 | 7 | 21135831 | C | A |
| Osa07LNT0383300.1 | 7 | 21135371 | A | G |
| Osa07LNT0383300.1 | 7 | 21135582 | G | A |
| Osa07LNT0383300.1 | 7 | 21135654 | T | C |
| Osa07LNT0383300.1 | 7 | 21135662 | T | C |
| Osa07LNT0383300.1 | 7 | 21135677 | T | C |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa07LNT0383300.1 | DTM_#DNAt_MULE_japo_Os0314 | Chr7 | - | 21135362 | 21135761 | 399 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa07LNT0383300.1 | osa-miR166c-5p | Cleavage | 4.5 | 24.176 | 1 | 20 |
| Osa07LNT0383300.1 | osa-miR395b | Translation | 5.0 | 12.222 | 1 | 21 |
| Osa07LNT0383300.1 | osa-miR395d | Translation | 5.0 | 12.222 | 1 | 21 |
| Osa07LNT0383300.1 | osa-miR395e | Translation | 5.0 | 12.222 | 1 | 21 |
| Osa07LNT0383300.1 | osa-miR395g | Translation | 5.0 | 12.222 | 1 | 21 |
| Osa07LNT0383300.1 | osa-miR395h | Translation | 5.0 | 12.222 | 1 | 21 |
| Osa07LNT0383300.1 | osa-miR395i | Translation | 5.0 | 12.222 | 1 | 21 |
| Osa07LNT0383300.1 | osa-miR395j | Translation | 5.0 | 12.222 | 1 | 21 |
| Osa07LNT0383300.1 | osa-miR395k | Translation | 5.0 | 12.222 | 1 | 21 |
| Osa07LNT0383300.1 | osa-miR395l | Translation | 5.0 | 12.222 | 1 | 21 |
| Osa07LNT0383300.1 | osa-miR395s | Translation | 5.0 | 12.222 | 1 | 21 |
| Osa07LNT0383300.1 | osa-miR395m | Translation | 5.0 | 12.222 | 1 | 21 |
| Osa07LNT0383300.1 | osa-miR395n | Translation | 5.0 | 12.222 | 1 | 21 |
| Osa07LNT0383300.1 | osa-miR395p | Translation | 5.0 | 12.222 | 1 | 21 |
| Osa07LNT0383300.1 | osa-miR395q | Translation | 5.0 | 12.222 | 1 | 21 |
| Osa07LNT0383300.1 | osa-miR395r | Translation | 5.0 | 12.222 | 1 | 21 |
| Osa07LNT0383300.1 | osa-miR1438 | Cleavage | 4.0 | 7.733 | 1 | 22 |
| Osa07LNT0383300.1 | osa-miR2877 | Cleavage | 4.0 | 18.192 | 1 | 24 |
| Osa07LNT0383300.1 | osa-miR2926 | Cleavage | 4.5 | 18.687 | 1 | 20 |
| Osa07LNT0383300.1 | osa-miR395y | Translation | 5.0 | 12.222 | 1 | 21 |
| Osa07LNT0383300.1 | osa-miR5073 | Cleavage | 5.0 | 20.907 | 1 | 23 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa07LNT0383300.1 | 7 | sp2(t) | Morphological trait | Panicle/flower | nan | nan |
| Osa07LNT0383300.1 | 7 | nan | Resistance or Tolerance | Insect resistance | RG773 | CDO59 |
| Osa07LNT0383300.1 | 7 | qLTG-7 | Physiological trait | Germination/dormancy | R1440 | R1357 |
| Osa07LNT0383300.1 | 7 | qLTG-7 | Resistance or Tolerance | Cold tolerance | R1440 | R1357 |
| Osa07LNT0383300.1 | 7 | Ph7a | Morphological trait | Dwarf | RG650 | C285 |
| Osa07LNT0383300.1 | 7 | QRl7 | Morphological trait | Culm/leaf | CDO497 | CDO385 |
| Osa07LNT0383300.1 | 7 | Ra7a | Others | Others | RG650 | C285 |
| Osa07LNT0383300.1 | 7 | dth7.1 | Physiological trait | Flowering | RM125 | RM336 |
| Osa07LNT0383300.1 | 7 | nan | Resistance or Tolerance | Other soil stress tolerance | C451 | R1245 |
| Osa07LNT0383300.1 | 7 | qSDS-7-2 | Physiological trait | Germination/dormancy | RM320 | RM234 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)