© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa07LNT0383600.1
CTCATCTTGGCTCCAGCTCGGTGAGCGACACCTCATTCGGCGACGCCACTGCTCTCGTCTTGCTGTCGCCGGTGGACCGAAGCGCGCTCGAGTAGAGATCCGTGTCGGCGGCGCTGTCCGTCTCCTGGATGCAGAACGTTGGCCTCGACGGGGCCTGGATGGAGAACGTCTCGCTGCTGAGCATCACGCTCACCGCCGACATCGTCGGCCTGTCCGCCGGGTTGTCCTGGACGCAGAGCAGCCCGATGTTGATCAGCTTCAGCAGATCGTCAGCTGAACGGCCGCGCATCGCCGGATCCAGCAGCTCCTCGATCGTCCCCGTTGTCCAGTGCTCCCAGACAAGACTCAAGAGGTCAATGGATTGCTCCGAGTTGGAGAAGCTGCTGTTTCTCCTTCCCGTGACAATCTCTAGGATCATAACTCCGAAACTGAACGCGTCCGACTTGACTGAATACTGCCCACGCATGGCGTACTCCGGCGCCATGTATCCGTATGTTCCAGCAATGTGACTGGTGACGTCTTGCGTTTGATCCCACTCAAACAGTTTCGCTAACCCAAAGTCCGAGATCTTTGGGTTGTGATCGAAGTCCAGCAGCACGTTGCTTGCTTTGAGGTCCCGATGAACTACCCTCAGTTGAGAATCTTCGTGGAGATATTGCAAGCCTCGAGCGACTCCGCTTACAATCTTGAGCCTCTTCCCCCAATCAAGATCTTTGCTTTTCTCATAATCGAAAAGAATGGTGTCGAGGCTCTTATTCGGCATGTATTCGTACACAAGTAGTTTCTCATCTCCTTCCAAGCAAACACCAACAAGGCTCACAAGGTTCTTGTGCCGAAGTTTTGCGACTAAAACTAGCTCAGTTTTCAGTTCTTCTATCCCTTGTCTTGAACTTTGTGAGAGCCTTTTCACTGCTATTTCTTGACCTTCAGAAAGAACTCCCTTGTAAACGGCACCAAACCCTCCTTCGCCAAGCTTATTTCTGTCAGCGAAGTTGTCTGTTGCAGCCCGTAGCGTTGATAGGTCCAGAAGGAGCGAGTCGATGCTTTGAATATCATCCGGATTAGTTGAGAATGGCAGTGATGAGGCCTTATTTGCTGGTGTTCTCTTTCTCCGGAAACAAAAGCATGTCAAGGCAATGAAGGCTAATGCTGCTCCAGCAATAGGCAGAGTAATGGCCAAGATCCGTCCTGTTCTATGGCTTGTTCTTCCTTCACTGGTCACCGGTGGTGTCATGTTAGCCGGCGGCGGCGGCGGCCCCGACAGCTGCAGCAGCGGCCGGCCGGAGAAGAACTCGTACGCCTCGAACCGGAAGTTGCACCGTACGCCGAACACCCTGCCGCCGGGCTTCCCGACGAAGTACTTGGGCGTCGCCTTCCTGATTATGTCCCCGAGGCAGCTCCGGCAGTCGGCCTCCGACATGTCCGGCGTGCACTGCGCCAGCGAGAAGATCCTCGGGTACGTCGCGTCGTCGGACCCGACCTCCCCCGTGCCGAACCGCCTCACCGGGTCCGCCGCCGCGTAGTCCGCCGTGGCGTTGACGAGCCGGCCGGAGGCGGCGTCGTACGCCGCCGCCTTCGCCGCGCTGACGTTGTTGTAGTTCCAGGCCACGAACCTCCCGCTGTTGTCGGTGACGTTGGCGAGGATGTCCAGGTCGGAGTAGCGGAGGATGCAGGGGTCGTTGAACAGGGTGGCGCGCTTGTTGAACGCGCAGAGCTGCTGCGCGGTGTCGAAGGCGGTGGCGACGCAGGCGGCGCAGGAGGAGGCGTTGGTGTCGCCGCGGCAGAGCGCGATGGCGTACACCACGTCCGGCGCCGTGCCGGCGGCGCCCTCGGCGAAGAGGGCCGGGGAAGACGACGCGTTCCCGGGGAGGGCGCTGGCGAGCGCGCGCACGTTGGCCTGGTAGGTGCTCCCCTCCGTGTAGTTGCCGGCGGTGGCGTTGCACAGTTGCCACGGCAGCGGCTGCGCTCCCGCGCGCGGAGGCGCGTGGAGGAACACCGCCACGAGCAGGGCGACTGCGGCGAGGTTGTAGCAGAGAGAAAGAGAGAGAGGAAGGTGTTGCCCGCGTCGCATGGCCGTCGCCGCCACCGCCGTCGCCAT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa07LNT0383600.1 | 7 | 21370150 | A | G |
| Osa07LNT0383600.1 | 7 | 21368770 | T | G |
| Osa07LNT0383600.1 | 7 | 21368948 | T | C |
| Osa07LNT0383600.1 | 7 | 21369229 | G | A |
| Osa07LNT0383600.1 | 7 | 21369447 | G | T |
| Osa07LNT0383600.1 | 7 | 21370083 | C | T |
| Osa07LNT0383600.1 | 7 | 21370111 | G | A |
| Osa07LNT0383600.1 | 7 | 21370248 | G | C |
| Osa07LNT0383600.1 | 7 | 21370541 | A | G |
| Osa07LNT0383600.1 | 7 | 21370695 | A | C |
| Osa07LNT0383600.1 | 7 | 21370724 | G | T |
| Osa07LNT0383600.1 | 7 | 21371166 | C | T |
| Osa07LNT0383600.1 | 7 | 21371391 | C | T |
| Osa07LNT0383600.1 | 7 | 21371430 | C | T |
| Osa07LNT0383600.1 | 7 | 21371742 | A | G |
| Osa07LNT0383600.1 | 7 | 21371755 | T | C |
| Osa07LNT0383600.1 | 7 | 21368933 | G | A |
| Osa07LNT0383600.1 | 7 | 21369591 | C | T |
| Osa07LNT0383600.1 | 7 | 21371805 | A | G |
| Osa07LNT0383600.1 | 7 | 21371846 | T | A |
| Osa07LNT0383600.1 | 7 | 21372014 | T | G |
| Osa07LNT0383600.1 | 7 | 21372155 | G | A |
| Osa07LNT0383600.1 | 7 | 21372195 | A | T |
| Osa07LNT0383600.1 | 7 | 21372225 | G | C |
| Osa07LNT0383600.1 | 7 | 21372262 | A | G |
| Osa07LNT0383600.1 | 7 | 21372358 | C | T |
| Osa07LNT0383600.1 | 7 | 21372474 | C | T |
| Osa07LNT0383600.1 | 7 | 21372496 | A | G |
| Osa07LNT0383600.1 | 7 | 21372630 | G | A |
| Osa07LNT0383600.1 | 7 | 21372659 | A | G |
| Osa07LNT0383600.1 | 7 | 21374025 | A | G |
| Osa07LNT0383600.1 | 7 | 21374093 | A | G |
| Osa07LNT0383600.1 | 7 | 21374111 | A | G |
| Osa07LNT0383600.1 | 7 | 21374248 | C | G |
| Osa07LNT0383600.1 | 7 | 21374290 | C | T |
| Osa07LNT0383600.1 | 7 | 21374363 | T | C |
| Osa07LNT0383600.1 | 7 | 21374376 | A | G |
| Osa07LNT0383600.1 | 7 | 21374526 | A | C |
| Osa07LNT0383600.1 | 7 | 21374545 | G | A |
| Osa07LNT0383600.1 | 7 | 21368927 | A | T |
| Osa07LNT0383600.1 | 7 | 21371532 | A | G |
| Osa07LNT0383600.1 | 7 | 21374465 | T | C |
| Osa07LNT0383600.1 | 7 | 21370753 | A | G |
| Osa07LNT0383600.1 | 7 | 21371097 | A | G |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa07LNT0383600.1 | DTM_#DNAt_MULE_japo_Os0087 | Chr7 | - | 21369683 | 21370061 | 378 |
| Osa07LNT0383600.1 | DTM_#DNAt_MULE_japo_Os0054 | Chr7 | - | 21370866 | 21371045 | 179 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa07LNT0383600.1 | osa-miR164a | Translation | 5.0 | 20.673 | 1 | 21 |
| Osa07LNT0383600.1 | osa-miR164b | Translation | 5.0 | 20.673 | 1 | 21 |
| Osa07LNT0383600.1 | osa-miR396c-3p | Translation | 5.0 | 15.294 | 1 | 21 |
| Osa07LNT0383600.1 | osa-miR164f | Translation | 5.0 | 20.673 | 1 | 21 |
| Osa07LNT0383600.1 | osa-miR2877 | Cleavage | 5.0 | 21.773 | 1 | 24 |
| Osa07LNT0383600.1 | osa-miR3979-3p | Cleavage | 4.5 | 7.452 | 1 | 20 |
| Osa07LNT0383600.1 | osa-miR5499 | Translation | 5.0 | 21.052 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa07LNT0383600.1 | 7 | qLTG-7 | Resistance or Tolerance | Cold tolerance | R1440 | R1357 |
| Osa07LNT0383600.1 | 7 | qLTG-7 | Physiological trait | Germination/dormancy | R1440 | R1357 |
| Osa07LNT0383600.1 | 7 | Ph7a | Morphological trait | Dwarf | RG650 | C285 |
| Osa07LNT0383600.1 | 7 | Ra7a | Others | Others | RG650 | C285 |
| Osa07LNT0383600.1 | 7 | QRl7 | Morphological trait | Culm/leaf | CDO497 | CDO385 |
| Osa07LNT0383600.1 | 7 | dth7.1 | Physiological trait | Flowering | RM125 | RM336 |
| Osa07LNT0383600.1 | 7 | nan | Resistance or Tolerance | Other soil stress tolerance | C451 | R1245 |
| Osa07LNT0383600.1 | 7 | qSDS-7-2 | Physiological trait | Germination/dormancy | RM320 | RM234 |
| Osa07LNT0383600.1 | 7 | sp2(t) | Morphological trait | Panicle/flower | nan | nan |
| Osa07LNT0383600.1 | 7 | nan | Resistance or Tolerance | Insect resistance | RG773 | CDO59 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)