>Osa07LNT0383800.1

AGCTCGAAAGGTACAGTTGCATGGATTCCATTAAGAGACTGAAACATCTGAAATGAAAACATCTGAAATGAAATGAAATGAAAACTGGCCGCAGCACCAGACATCTTGGAAGCGGCTTTGGCAATCTCCTCCTTTGCTTCCCCAAGATAACGAAGAAGAATCTCAAAAGATTGGTTATCCTGATCACCGAGCCTAACTATCTCATTCGCAGTGCTTTGCAAAACATTATGCCTGAATACTCTTGCCTGGGCCATCCCAACATCATCTGGAAAGGTCCCAAGGTGTGCTGGGATAGAGTCACGAGCTTTCTTGGTCCATCGCATCATTAATATGGCATTGAGGAATAGTACGCACGCCCAGATGTAGCATAACTCAAACCACACTCGCACGTTTAACTCTGACATGTGTTATGAAGAATCACACTGTACGTCGTTTTGCACCATTTTTCCCAGTAGCACATTTCAGCAGCCTCATCCTCGCTGGGCAACCACATCTTCTGGTTTAATCTGGTTTACCCTTGGGCTTGGCGGCTGCCGTTGGCGCAACAGAGAAGCGGAGCGGCGCGTGCGCGGCCATGGGGCTGGCCCGCGCGTCGTCGAGGTCACGGGCGGAGCTGTAGACCGCGCGGCGGAGCCACCCGTTGGATCTCGCCCGCCGCCTGTCCCACTCCGTGGCGGCGCCGACGAGGGAGTCGTTCGGCATCGCGTACATTTCGCCTCCATCTCTATTGTGTTTGATTCGATGAGAT

Explanation	CPC Score
noncoding (weak)	-0.951272

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa07LNT0383800.1	osa-miR5797	Cleavage	4.5	11.395	1	21
Osa07LNT0383800.1	osa-miR171f-5p	Cleavage	4.5	19.385	1	21
Osa07LNT0383800.1	osa-miR166j-5p	Translation	4.5	16.823	1	21
Osa07LNT0383800.1	osa-miR396e-3p	Cleavage	4.0	21.772	1	24
Osa07LNT0383800.1	osa-miR2094-5p	Cleavage	5.0	19.822	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa07LNT0383800.1	7	qLTG-7	Resistance or Tolerance	Cold tolerance	R1440	R1357
Osa07LNT0383800.1	7	qLTG-7	Physiological trait	Germination/dormancy	R1440	R1357
Osa07LNT0383800.1	7	Ph7a	Morphological trait	Dwarf	RG650	C285
Osa07LNT0383800.1	7	Ra7a	Others	Others	RG650	C285
Osa07LNT0383800.1	7	QRl7	Morphological trait	Culm/leaf	CDO497	CDO385
Osa07LNT0383800.1	7	dth7.1	Physiological trait	Flowering	RM125	RM336
Osa07LNT0383800.1	7	nan	Resistance or Tolerance	Other soil stress tolerance	C451	R1245
Osa07LNT0383800.1	7	qSDS-7-2	Physiological trait	Germination/dormancy	RM320	RM234
Osa07LNT0383800.1	7	sp2(t)	Morphological trait	Panicle/flower	nan	nan
Osa07LNT0383800.1	7	nan	Resistance or Tolerance	Insect resistance	RG773	CDO59

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus