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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0035200.1

GCTGTACCTCTTGTTCCGTGCCACACAACGAGCATATAACCTGCTGCACTTCATGGCGTGGGAGTTCATGCCTCTTCACAGCATCAATTTTAATTGAATTCTTTGTTTCATTGTGGCAATGCCGACAATCAAAAATCTCGTTGCAACATGGAGCTCGAATGCGGCACCTTCTTCGATAATGTGCACACCCATACTGCATTATCCCTTCCTCAAGTTTCTCATAATCATCAGGGTCCACATCTTCGGTCTTTTCAGTTGCGTACTTCTCATCAGACAACAGAGAAACTAGAGCATGTTCCTCCACATTTATCTTAGCTTGTCCATGTTGAACAGCAGTAGACTCAAGTTGTACGTCCATGGCGCCCATCTTGAATGTTTTGCACCACAAAAACTATCACGTTGCCAATACAACAGAAAACACCTGCAAGTATTATGCATTTAGCAGGATAGTTCTCACTACAGAATGCAGTCAGGTCCTAAAAAATGAGGAAACCACTGCATGCACTCCAGGGTTGCTGTATACTGCCGAACTCCAGGCAAATCAACAAAAGACCAAAGCAATGTCGAACAGCTCCAGTCGGCACAATCCCAATAGATTGATCACCAAACAATCACAGCTAGCACTATCTGGATAGCGAGCTGTATTAAGAAATTTACTACTCAATAAGGTATCCATCCAGATTCCATGGAAGAGTTCCCAAGCAATTCGAACAGTGTCCATCTGCATCAAACTTACTGTGGTGTCCACCCCCATTCTCTGGCAAGAGGAACACGTAACAGCATCAAATGCCAGGAAACAAGAAGAAAAAGAAAAAAGAAAAAAACAAGCGTGACGGTTTCATGATAAGGCTTTGGTTATTAGCTTACACCAATCAGATACGTCGTTACTTAGGACGTTAGATCATAAGGGAGCCTACCTCCAGCTGCCAACAGCTTCATCTTCAACAAAAGAAACTTCTCCATTCTTTTAATTAAAATCCATAGCACATCCATATAAAAAACTTATTCCTTTGCTTCTCCAATCAGGGAACTTCTTGAGCCTCTCACATCCATCATACTAAGACTTTTTTACTTCATTGGTTTGTACCTGAAATTTAACCTATCTACAAAACTTCTCTACTGAATACAGTCATCTCAATGACTGGTACAATACTCTGACAGAACCTGCATAAGAGAATTCACTTTCCCAATTCTCTGGCAAGGAGTGGTGGAAATTAGTAGCCAATACATGGTAAGTAGTCCACTGCTTTCCCAATTCCATTGATATAGATGAGGCAAATTGAAGGATTTGTCCAGAAAAGTAATAAGTTCCCCATCGCCTCGTCGCTCTCTTGCCTGACAAAATTTATTTTCTTCCCTGTATTTGGTCTAGAATTTTTCTATTCTATTATTTTTATTTTTATTTTTTTAACAGGAGAGATGGACCATGGGAGAGGCACAAACATAGGGTACTGGGTGTGGTACAAGGAGAGGAAGCAAAATGCAGAGTCCATATGCAGAAAACATTGGTTAGGAAATAGATAACGTGGTGCTGATAGCAATACAAGACTATCGGTTTAGAGTGAATACGCACAAAGAATCCTAATAACCCCTTGCACAGAGATTGCTTTC

Coding Potentia
Explanation CPC Score
noncoding -1.08009
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0035200.1 1 29967916 T G
Osa01LNT0035200.1 1 29969534 G A
Osa01LNT0035200.1 1 29969699 C G
Osa01LNT0035200.1 1 29969908 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0035200.1 osa-miR5788 Translation 4.0 9.21 1 21
Osa01LNT0035200.1 osa-miR164e Cleavage 5.0 8.267 1 21
Osa01LNT0035200.1 osa-miR1320-5p Cleavage 5.0 12.533 1 21
Osa01LNT0035200.1 osa-miR2876-5p Translation 5.0 15.677 1 21
Osa01LNT0035200.1 osa-miR2923 Cleavage 4.0 13.586 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0035200.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0035200.1 1 qHUS-1-2 Others Others RM246 RG101
Osa01LNT0035200.1 1 qLRC-1 Resistance or Tolerance Drought tolerance RM237 RM302
Osa01LNT0035200.1 1 yld1.1 Physiological trait Source activity RM5 RG462
Osa01LNT0035200.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0035200.1 1 nan Morphological trait Root RM3475 RM3494
Osa01LNT0035200.1 1 An10 Morphological trait Panicle/flower nan nan
Osa01LNT0035200.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus