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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0385000.1

AACAGGCATCTTAACAAAACTTTGCATAGAGTAGATTCCATAAAACACGTTCTGATGATAAGACTTCGTTTTGTTGGGAACAATATCCAAATCGATAGGGTCAAAACACCAGCCCTGCCAGGACTTCAAGCAAAAGGATCTGTCTATAAACTACCCATGAATAATGCGAGTACAAGCTCATGCTGCGGTGAAGGCCTTCTTGCCGCCGCTGCCGCCGGTGGATCCAGCTGGGATGACCTTCAGGACGTTGAACCTCACAGTTTTCGACAGCGGCCTGCACTGGCCAATGATGACATGGTCACCTTCCTTGACACGGAAGCATGGGGAGACGTGAGCCGGAATGTTGGAATGCCTCTTCTCATACCTCTGATATTTCTTGACAAAATGGAGGTAGTTCCTGCGAACAATGATAGTTCTGTTCATCTTGGCACTGTGGCATGTTCCAGCAATGATTCTGCCTCTGATAGAAACAGTTCCAGTGAATGGGCACTTCTTGTCAATGTATGTCCCTTCAATTGCTTCCCTGGGGGTCTTGAAGCCAAGGCCAATGCTCTTCCAGAAGCGGTTGCCACCCTTGCCTGGCTTCTTACCCTTGCCAGACTTCTTTGAGCTGAGGAAAACCTTTGGCTGCTTCAGGAAAGCCTTCTCAGTCTGCTCAGCCATGGCTGCGGGGCGAGGGTGACGACCGGCGAGTCGGCGGCGGCGGCGGCGGCGCGGGGAGTGGAGGCGAGGCTTGCGAAGGAGGATGCGGCGGC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.0967491
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0385000.1 7 22656424 T C
Osa07LNT0385000.1 7 22656160 C G
Osa07LNT0385000.1 7 22656664 A G
Osa07LNT0385000.1 7 22657792 A G
Osa07LNT0385000.1 7 22657804 G A
Osa07LNT0385000.1 7 22658361 C A
Osa07LNT0385000.1 7 22659266 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0385000.1 osa-miR5822 Translation 5.0 13.264 1 21
Osa07LNT0385000.1 osa-miR1853-5p Cleavage 5.0 23.558 1 24
Osa07LNT0385000.1 osa-miR2094-5p Cleavage 4.5 24.821 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0385000.1 7 sp2(t) Morphological trait Panicle/flower nan nan
Osa07LNT0385000.1 7 qCIVG7-2 Resistance or Tolerance Cold tolerance RM336 RM118
Osa07LNT0385000.1 7 grb7-2 Morphological trait Seed RM505 RM336
Osa07LNT0385000.1 7 qLTG-7 Resistance or Tolerance Cold tolerance R1440 R1357
Osa07LNT0385000.1 7 qLVG7-2 Resistance or Tolerance Cold tolerance RM336 RM118
Osa07LNT0385000.1 7 Ra7a Others Others RG650 C285
Osa07LNT0385000.1 7 qLTG-7 Physiological trait Germination/dormancy R1440 R1357
Osa07LNT0385000.1 7 Ph7a Morphological trait Dwarf RG650 C285
Osa07LNT0385000.1 7 QRl7 Morphological trait Culm/leaf CDO497 CDO385
Osa07LNT0385000.1 7 nan Resistance or Tolerance Other soil stress tolerance C451 R1245
Osa07LNT0385000.1 7 qSDS-7-2 Physiological trait Germination/dormancy RM320 RM234
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus