>Osa07LNT0385300.1

GCCAATTGCCCTCTCTTCAGAAAACCTAGGAAGCTGAACAAGTGAGTTTACCCGTGTCACTCCATCGAGACCTGACCAATTTTGGTCGTTCGCTACACCAGCAATCCTCGCATCCACCCCTGCTAAGGTCTTCTCTTGCGTGCTGCCTGCAACTGTCCTAACTGTGAAATTCCGAGTTAAGGTGGGCTCCTGCTCCTGAGGTTCATTAGGATCTGCAACTGAACCCTCTTCAATACTGATGTTGTCCAATGAGGCAGTTGAGTCACGCTCATGGTCCATTTTTCCATCCAAATATAAGCAAACAACCGCGCAATCATCGATTTTGGATGTTGGATATTTGGTTTTCCATTCACGAGTGGCTGCCTCAACAAGGGATTTTGCAGCCTTTGATCTGCTTGGGGACGCGGACACTATATCAACAGCCTCTTGATTGCTGAGGACATCCCATACCCCATCCGATGCAAGAATGACGAACTGGTCCTTTTCTGTGAGAGACCAGTGGAAGAATTCCGGCACCGAGATGACCCCGTAATCTTTCAGGCAGAAGTCCCCGAACGCTCGCGCCATCGCGAGGCCCGGCGCGTCGTCGAACGGCAGCCAGACCCTTGGCACCTCCGGCTCGTCCTGCAGCGCGAACACCCTGCCCCTGCACTTCTTGATCCTCTCCGCTTCGCTGGGGACATCCGGCTTGAGATCAACGGTGAGCTGCACGGCGACCATGCCGCCGCCGGTGGCCTCCCTGGAGCCGAGCACGGCGCGCGAGTCCCCAATGTTGGCCATGTAGAGATCCGAGCCGAGCTTGAGGACGGTGACGGCAGTGCTTCCGCTGCAGAAGCAATCGAGGGAAGGGTGCGACCGGAGGTCCTTGTCCATGGCCTTGTAGGCGCGCGCGAAGGCCTTCCTCCATGCGGCGGCCGGCATGTCCGCCCCGCTGTCGCGCGCCGCGGACATGAGCCTCAGCGGCAGCGAGTCGCGGACCCTCCGCGCCACCACGTGCCCGTGCGGCCCGTGCCCGTCGAACACCCCGCACAGCACGCCGTCGTCCTCGCCGCCGAACCCATCCCAGACGAGCATGGCGTCCTGGTTGATCCCCTTGCGCCCTTGCTGCGTGTACACCGTCGCCGTCCGGCTGCGGCCGTCGTTGGAGAAGATCCGGCCGGGCACCATCCCGAGCTGATCTTCCCGCGGCGCCTTCCACCTCCTCCTCCGCCTCTTCCCATCCTCCCCTCCATCACCACCCGCATCCACCGCCGTCCCGCTCCTCGCCACGCAGTTCCCCATCCTGGGTGATGCCGAGGTGAGGTGACGAGGCGAGACGGAGAAGAGAGAGAGAGGGGGGTGGGAACATGGAGGTAGGCTTATTTATTGCGGGGGGCAGCGGACACCACCACCTCCACCTCCACCTCCTCC

Explanation	CPC Score
noncoding (weak)	-0.54396

Transcript ID	Chromosome	Locus	Ref	Alt
Osa07LNT0385300.1	7	22726817	T	C
Osa07LNT0385300.1	7	22728549	A	C
Osa07LNT0385300.1	7	22727200	G	A
Osa07LNT0385300.1	7	22728822	C	G
Osa07LNT0385300.1	7	22729488	T	C
Osa07LNT0385300.1	7	22727113	A	C
Osa07LNT0385300.1	7	22730184	C	A
Osa07LNT0385300.1	7	22730749	T	C
Osa07LNT0385300.1	7	22731146	C	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa07LNT0385300.1	osa-miR812p	Cleavage	4.5	18.572	1	24
Osa07LNT0385300.1	osa-miR413	Cleavage	4.5	12.995	1	21
Osa07LNT0385300.1	osa-miR444a-3p.2	Translation	5.0	23.465	1	21
Osa07LNT0385300.1	osa-miR444d.2	Translation	5.0	23.465	1	21
Osa07LNT0385300.1	osa-miR444e	Translation	5.0	23.465	1	21
Osa07LNT0385300.1	osa-miR812f	Cleavage	4.5	18.578	1	24
Osa07LNT0385300.1	osa-miR2106	Cleavage	4.0	12.391	1	21
Osa07LNT0385300.1	osa-miR812k	Cleavage	4.0	18.578	1	24
Osa07LNT0385300.1	osa-miR812l	Cleavage	4.0	18.578	1	24
Osa07LNT0385300.1	osa-miR812m	Cleavage	4.0	18.578	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa07LNT0385300.1	7	qLTG-7	Resistance or Tolerance	Cold tolerance	R1440	R1357
Osa07LNT0385300.1	7	qLVG7-2	Resistance or Tolerance	Cold tolerance	RM336	RM118
Osa07LNT0385300.1	7	qLTG-7	Physiological trait	Germination/dormancy	R1440	R1357
Osa07LNT0385300.1	7	Ph7a	Morphological trait	Dwarf	RG650	C285
Osa07LNT0385300.1	7	Ra7a	Others	Others	RG650	C285
Osa07LNT0385300.1	7	QRl7	Morphological trait	Culm/leaf	CDO497	CDO385
Osa07LNT0385300.1	7	nan	Resistance or Tolerance	Other soil stress tolerance	C451	R1245
Osa07LNT0385300.1	7	qSDS-7-2	Physiological trait	Germination/dormancy	RM320	RM234
Osa07LNT0385300.1	7	sp2(t)	Morphological trait	Panicle/flower	nan	nan
Osa07LNT0385300.1	7	qCIVG7-2	Resistance or Tolerance	Cold tolerance	RM336	RM118
Osa07LNT0385300.1	7	grb7-2	Morphological trait	Seed	RM505	RM336

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus