\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0385700.1

TGTGGATATTATGGGTACCCCATACCCATACGGCATGGTTATCCGACCAGTCATAGGGGATAACTTATATCTATAGAATATGTAATAGATCATGACTCGGGTATTACGTTTCCTTATATATTACGGAACAGCCTAAAGTCCTGGTTTGATAATATTGTAAAGTAGATTTAGGAAACCGATACCGTATTGGTTAAGGTTTCTATCTTGTAATCCTGCCCCCCACCCTATATAAGGTGGGCAGGAGGCCCTCTAGGGGGCATGAGACAACCTGATCGTCAGATCTATAATACACCCGGCGGATTCAAATCCCCAAACAGGAGTAGGGTATTACCTCTCATTGAGAGGGCCCGAACCTGTCTAAATCCTTTGTCTCCAC

Coding Potentia
Explanation CPC Score
noncoding -1.52811
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0385700.1 osa-miR1854-3p Cleavage 5.0 20.202 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0385700.1 7 qCIVG7-2 Resistance or Tolerance Cold tolerance RM336 RM118
Osa07LNT0385700.1 7 grb7-2 Morphological trait Seed RM505 RM336
Osa07LNT0385700.1 7 qLTG-7 Resistance or Tolerance Cold tolerance R1440 R1357
Osa07LNT0385700.1 7 qLVG7-2 Resistance or Tolerance Cold tolerance RM336 RM118
Osa07LNT0385700.1 7 nan Resistance or Tolerance Other soil stress tolerance C451 R1245
Osa07LNT0385700.1 7 Ph7a Morphological trait Dwarf RG650 C285
Osa07LNT0385700.1 7 Ra7a Others Others RG650 C285
Osa07LNT0385700.1 7 qLTG-7 Physiological trait Germination/dormancy R1440 R1357
Osa07LNT0385700.1 7 QRl7 Morphological trait Culm/leaf CDO497 CDO385
Osa07LNT0385700.1 7 qSDS-7-2 Physiological trait Germination/dormancy RM320 RM234
Osa07LNT0385700.1 7 sp2(t) Morphological trait Panicle/flower nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus