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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0385800.1

GCGACGGGTGCCTCGGAGCCGGAGGCCGGGGCGGGCGCCATGGAAGGGGCAGCAGAGGAGTGGCCGGAGGCGGCGACGCGGATGTCCACCTTCTGGCCGATGCCGCAGTGGCCCGGGAAGCCGCAGAGGAAGTAGTGGTGGCCCGTGGCGTTGAGGACCACCGAGTCGTTGCCCGTCGACCAGGTGGCGATCGGCTTGCTCGTGTCGCAGTTCTTGTAGTCCGACTTGCTCACCGCCATCACGTTGTGGAACTGCTTGTTGTACGTGAAGACTGCACGGCGACGGTGTCGCCGAGATGGAACTTCTTGGAGGCGGCCCAGGCTGTGTAGTTGGGGCTGCCCATGATGGTCCACCCGGTCTTGTCGCCCACCTCGTACACGGCCGCCGCCGCCGTCGCCGTCCCCGCCCACATCACCACCAACGCCGCCGCCGCCGCCACCGCCACGGCCATGGCCGACGACACCCTGCTCGCCGCCGCACCACCACCCATGACCGAGAGCGAGAGGAGTAGAGAGCGAAGTGCAGGTTAGGACAGTGGCGAGAGTGGCACAAACCGGCCGGTTAAATAAAAGCTCCGCAACTTTTCGATCCCCTCGTGGGGTCGTGGTCGTGTCTCCTCCCGAAAATGCCCCCGCGCCGCGGCCAAGCTTTCCTTTCGGCGTGTGTCATCGCCACGGTGTGTCAGTCACCGCGCGAGCGACTCGTGGGTAAATTTCTCTCGCCTTTTATCATCGCGGCGCCGACTGCGTGT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.805905
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0385800.1 7 23000862 T C
Osa07LNT0385800.1 7 22997240 A G
Osa07LNT0385800.1 7 22997392 A G
Osa07LNT0385800.1 7 22998129 G C
Osa07LNT0385800.1 7 22998328 A C
Osa07LNT0385800.1 7 22998556 G T
Osa07LNT0385800.1 7 22998606 T G
Osa07LNT0385800.1 7 22998972 G C
Osa07LNT0385800.1 7 22999267 A G
Osa07LNT0385800.1 7 23000306 C A
Osa07LNT0385800.1 7 23000505 G A
Osa07LNT0385800.1 7 23000589 A C
Osa07LNT0385800.1 7 23000613 G C
Osa07LNT0385800.1 7 23000627 C T
Osa07LNT0385800.1 7 23000655 C T
Osa07LNT0385800.1 7 23001092 C T
Osa07LNT0385800.1 7 23001499 T C
Osa07LNT0385800.1 7 23001583 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0385800.1 7 qLVG7-2 Resistance or Tolerance Cold tolerance RM336 RM118
Osa07LNT0385800.1 7 Ph7a Morphological trait Dwarf RG650 C285
Osa07LNT0385800.1 7 Ra7a Others Others RG650 C285
Osa07LNT0385800.1 7 QRl7 Morphological trait Culm/leaf CDO497 CDO385
Osa07LNT0385800.1 7 nan Resistance or Tolerance Other soil stress tolerance C451 R1245
Osa07LNT0385800.1 7 qSDS-7-2 Physiological trait Germination/dormancy RM320 RM234
Osa07LNT0385800.1 7 qCIVG7-2 Resistance or Tolerance Cold tolerance RM336 RM118
Osa07LNT0385800.1 7 grb7-2 Morphological trait Seed RM505 RM336
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus