Transcript

Sequence

>Osa07LNT0386100.2

TCGGCGGCCTTCCATACGATGGGGCTCTTCGGATTGGAGCCCCCTTTCCGCTGCATCTGCGGCTGGCCTCCATGGTGGTGATGGTTGTGGTAGCCTCCGCCGCCGCCGCCGCTGCTGCTACTGCTATGGTGATGGCCGCCGCCCCCACCACCGGACACCCCGGCCCTCCTGCTCCCCTCCCGGATCCGGTCCATCCTCAGATCTGAGACATGCGCCCCCCGATCTTCCTCCAAAATCCCCTCCTCTCCTCCCCGGATTCCTCCCCCAAACCTCACCACCAAACACCACAAGATCCAACCAAAATCAAAATCACTCCGCTAAGATTAGAGAGACCCTCTTCCTCTCGCTACAAATCCCCTCTCTCTCTCTCTAGGCTACTCCTACTACTCTGGCTCTCCTCTCCTCTCCTCTCCTCCTCAGCTATGGTGGTGGCCTCCTCTTCTTCTCGCCGCTGCTCTCTCGTCTTGTGGCCTCCTCCTCCCCCTCTCTGCCTTGGCCTTCCGTCTG

Coding Potentia

Explanation	CPC Score
noncoding (weak)	-0.790942

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa07LNT0386100.2	7	23055634	T	C
Osa07LNT0386100.2	7	23055666	G	C

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa07LNT0386100.2	osa-miR5819	Cleavage	4.5	14.885	1	21
Osa07LNT0386100.2	osa-miR3979-3p	Cleavage	5.0	5.825	1	20

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa07LNT0386100.2	7	grb7-2	Morphological trait	Seed	RM505	RM336
Osa07LNT0386100.2	7	qLVG7-2	Resistance or Tolerance	Cold tolerance	RM336	RM118
Osa07LNT0386100.2	7	qCIVG7-2	Resistance or Tolerance	Cold tolerance	RM336	RM118
Osa07LNT0386100.2	7	nan	Resistance or Tolerance	Other soil stress tolerance	C451	R1245
Osa07LNT0386100.2	7	qSDS-7-2	Physiological trait	Germination/dormancy	RM320	RM234
Osa07LNT0386100.2	7	Ph7a	Morphological trait	Dwarf	RG650	C285
Osa07LNT0386100.2	7	Ra7a	Others	Others	RG650	C285
Osa07LNT0386100.2	7	QRl7	Morphological trait	Culm/leaf	CDO497	CDO385

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus