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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0386500.1

ACCGCCCATCGCACCCATCCCCTCCGCGCATCCCGGCCCTAACCGCCGCACCCATCACTCCCCTCACCATCGCCGGCTGTCTCCCTTTCCAACCTTGCCGGCCGCCGATTCCCCTAACCGTCACCATCGCGCCGCCACCGATCTGGAGTCGCCTGGGTCATTGTCGCCCCCAAGCCGCATAGGCACGACCCGGCGTGGTCCTTGTCGCCAGCGTCGCCACCAATCTCCGCCTCGTCCCCTGCCTCGCCGGTCTTCTCCGAGAACCCACGACCTCGCGTCCGCTGTCTCCTCTGTCGCTAGATCGCTATCCTCTTACGTACCACCCGCCTCTCCGGCTCCGGTTCGCTGCGAGTGCCGTGGCCTATCCCCCCACTCCGCCGCATATCGCGTCGGCCGGGAAGAAGGGGGAGTAGTCGTGTTGCAGTTGTCGGCCCCTGGCACGAGCGCAAATGATTTAGTCGGCGTGCGATGGTGGTGGTCTGACAAGTTCAGCCGACCGATGCATCCACTGGGAGCCCAAGCCGACACTGAAGAAGAAGCCCTCTGCCGTTGGCCGTCGGTAGTGCCGGCATTGTCCAGCCACTTGTGGCTGCGCCGGACGTCCACACAGGGACGCTGAGCCATCCATACAGGAGCAGACGTGGACGCACTGACGGTGGCAGTTTGACAGGCTCAGCCTATTTGACGCATGGGGCTCTCATCTCTATGGTGTAGTGCGCATGAAGGGTTGTAGCTGCTGGACTATACCATGATGATAATCTGAAGGGAAAAGAAAGAGCCAAGGGATGTTACGTGTTTGAATTAGAGGGAACACTCATTGGCTTTATCATTTAAAAGCATTTTGCAAGGCATGTTCTTCTCAATTGATAAAAGTGAGCAGTGCAAATATTTTGGTTGAGTCCCTCGCGCCGCCAAGGATCCTGTGCCATCTGCTCCATTGCACCGCCACCGGAACCCTCTCCACCGTGCTGCGAACAAGGAAATCATTGCTTGATTCCGTTCCTTCAACCATTACAGTTCAAATGCAAAATTATGAAATTAGTGGATGTGATTGTGAATGATAGTGTCACGTCTCTTATGTATGTGCATCCCAATATCAATGGCTATTATGCATCTCTTCGAAAGTTACTGAAATAGAGAGAAATTATAAAATAAAAATGAATATATACTTGCTGTTTAATTTTCCTCCCTCGCACTATAGCATACACTACTCAGAAAATTGAAAATAAAAATGAATGCCAAGTTATTGTTTCACACTGATTTTAGACTCAATCTATATGTTTCTCTAACTCAAGTGATTATTTTCTGGATAACCTGGGAGAAAACAATTTATTATGTGAA

Coding Potentia
Explanation CPC Score
noncoding -1.3403
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0386500.1 7 23205451 A G
Osa07LNT0386500.1 7 23205317 C T
Osa07LNT0386500.1 7 23205452 G T
Osa07LNT0386500.1 7 23205499 A G
Osa07LNT0386500.1 7 23205507 C T
Osa07LNT0386500.1 7 23205569 T G
Osa07LNT0386500.1 7 23205668 A G
Osa07LNT0386500.1 7 23205680 T A
Osa07LNT0386500.1 7 23205794 A C
Osa07LNT0386500.1 7 23206836 T A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0386500.1 osa-miR1854-5p Translation 4.0 12.796 1 21
Osa07LNT0386500.1 osa-miR5156 Cleavage 4.0 18.544 1 24
Osa07LNT0386500.1 osa-miR5498 Translation 3.5 12.614 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0386500.1 7 nan Resistance or Tolerance Other soil stress tolerance C451 R1245
Osa07LNT0386500.1 7 qSDS-7-2 Physiological trait Germination/dormancy RM320 RM234
Osa07LNT0386500.1 7 qCIVG7-2 Resistance or Tolerance Cold tolerance RM336 RM118
Osa07LNT0386500.1 7 grb7-2 Morphological trait Seed RM505 RM336
Osa07LNT0386500.1 7 Ra7a Others Others RG650 C285
Osa07LNT0386500.1 7 qLVG7-2 Resistance or Tolerance Cold tolerance RM336 RM118
Osa07LNT0386500.1 7 Ph7a Morphological trait Dwarf RG650 C285
Osa07LNT0386500.1 7 QRl7 Morphological trait Culm/leaf CDO497 CDO385
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus