>Osa07LNT0388200.2

AAGATAAACATAGCTTTCATATTCCCAGTCTAGACAGTCTTAAACATACTTGAAGTTTATTCAACATGTTCAGCGAGAAAGAACAGAGGAAGGAATGATACATCTTTGCAACACTATCTGACTAACAACCTAAAAGTGAGTAGCAGCTGATCAGCAGAGATGTCCTGCTCAATATGTTCCTATGCCAATTCTTCCATCTCCGTGGCACAGCCTCGGAACCACCTCCAACAGGATTATTGTCCCCCCTTTTGCAGAAGACAGAACATGTGCTGAGAACAAATTCCAACTTTACTGTGAAGCATCTTCTGAGTCGAACAGCATGGACAGAGCATTGCAACTTCCCAAGCATATCGACCGACTCACATGTGCATCATTGAGCCAACAGTGTACATGTACCATCTACACCCTAGCCTTAAGGATCCAATTCTGTTTCAGCAGGTCCCAACTGTCGATGGTAAGGAAGAACCCTGCTCTGCCTTTTCTGGCCTCCTCTCAGTTCCGAGAAAATCAAGGACATGTTTTAACACTTCACTTGGCTTTTCAACATGAGGAATATGACCACACTCCCGTACCTGCCTTAAAATTGCATCTGGGAGTTCCTGGTGCAACCTATATGCTTGTTTGTTGCTAATGATTCCATCCTCCTCTCCCCATAAAATCAGGCATTTATGCTTTACCTGATTTATTTGGTTTAGGACATTATAACCCCCATTCATCATAAAATCAACAAGAGCATCTTCCCACCAAGGAAGTAGGCAGTGTAGACGGCCAATTTGCACCCAGTCAAACAATCCAGCTGGACCACCTGGAATTTTATAAAACGCCAAAAGAGTAGCAAAATACCGCAGTGGGAGACTCTTCAGTAGAAAAACCCCAGCATATGGAACGAATCTAGGCATTCTTGTCATATCTCTTGTGCCCTCAGCATATACACTTGCACTAATGAAGATCAGTTTTGACACCGCTTCCGGATAGTTGACAGTAAAATCAATAGCAACAGCAGCACCGAGACTTGGTCCAACTAACACCATAGGCCTTCTAATGTAGGATCTCCAGAACTGGTAAAGATGCTCCCGTTTGGAGGCTACATCACCCGGTGGCCGTTTCTCTATGAGACAATATCCAGAAACATTCAGGTGTTGCAACTTACACCTGTGTGTGTCAAGCAAATCCATGAAACAAAAACCAACGACATGCAAAGAAGGATCATACCTAGATCCGAGAAGCCCCATCCAAGAATGTCCACAGCCCAAGCCTCCAGTCCAGCCTCCTCCAACAACGGGTAGGTGTACCTCCACTCTAAACAAGAACTGTATCTAATACTTTTAAAAGGTCCAGGCTGCTAATCCCACACTCTTGTACACATATACCGTGGCCAACACTAGATTTCCTGTCGAAGCCATGGAGCAGAAGGACGGGGTCCCTGTCCTGCTGCTGCTTGAGCGGCCTCACGCAGCTGCTAAGTATCGGGCTCTGGGAGAAGCCAGTCTGGACGGGGACTCGCTCGATTCGCTTGGCGAGGCGGATGGCGGGCTCGTCGCGGATCCGCTCCACCGCCGCGGGGAGGAACCCCGGGAAACCTCCTCCTCCTCCTCCTCCCCCGGCGCGGCCGTTCACGCCGGCGGAGGCGGCGGCGACCCTGACGCGGCCCCTGCATGACGGCCGCGGCGGCGCCAGCGCCGGCGAGGAGGAGGAGGAGGAGGCGAGGAGCAGCGGAGGCATTGGGGTGCGGTTGCTCGTTGCTGCTGCGGTGCGTGCGTAAGCGGCGGGCGTTTATAGGGCGCGGGAGGACGGCGAGCGAGGGCCGCGTGGCTGCGGCTGCGGCACCGCACGGCGGCGCGTGGGCGGGGGGCCATCTGAATT

Explanation	CPC Score
noncoding (weak)	-0.825161

Transcript ID	Chromosome	Locus	Ref	Alt
Osa07LNT0388200.2	7	24581210	A	T
Osa07LNT0388200.2	7	24581471	T	A
Osa07LNT0388200.2	7	24581699	A	G
Osa07LNT0388200.2	7	24582470	C	T
Osa07LNT0388200.2	7	24580409	A	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa07LNT0388200.2	osa-miR408-3p	Translation	3.5	16.753	1	21
Osa07LNT0388200.2	osa-miR1857-5p	Cleavage	4.0	16.734	1	21
Osa07LNT0388200.2	osa-miR1861b	Cleavage	4.5	20.782	1	22
Osa07LNT0388200.2	osa-miR1861f	Cleavage	4.5	20.782	1	22
Osa07LNT0388200.2	osa-miR1861i	Cleavage	4.5	20.782	1	22
Osa07LNT0388200.2	osa-miR1861l	Cleavage	4.5	20.782	1	22
Osa07LNT0388200.2	osa-miR2095-5p	Cleavage	5.0	8.868	1	22
Osa07LNT0388200.2	osa-miR2118d	Cleavage	4.5	22.489	1	22
Osa07LNT0388200.2	osa-miR2118e	Cleavage	3.5	22.489	1	22
Osa07LNT0388200.2	osa-miR2118p	Cleavage	4.0	22.489	1	22
Osa07LNT0388200.2	osa-miR2118r	Cleavage	3.5	22.489	1	22
Osa07LNT0388200.2	osa-miR5498	Cleavage	4.0	17.987	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa07LNT0388200.2	7	qLCC-7	Physiological trait	Source activity	R2394	R2677
Osa07LNT0388200.2	7	qCDS-7	Physiological trait	Source activity	R2394	R2677
Osa07LNT0388200.2	7	qLVG7-2	Resistance or Tolerance	Cold tolerance	RM336	RM118
Osa07LNT0388200.2	7	Ph7a	Morphological trait	Dwarf	RG650	C285
Osa07LNT0388200.2	7	Ra7a	Others	Others	RG650	C285
Osa07LNT0388200.2	7	QRl7	Morphological trait	Culm/leaf	CDO497	CDO385
Osa07LNT0388200.2	7	nan	Resistance or Tolerance	Other soil stress tolerance	C451	R1245
Osa07LNT0388200.2	7	nan	Others	Others	RZ395	RZ264
Osa07LNT0388200.2	7	qPH7-2	Morphological trait	Dwarf	RZ626	RG650
Osa07LNT0388200.2	7	qSDS-7-2	Physiological trait	Germination/dormancy	RM320	RM234
Osa07LNT0388200.2	7	qCIVG7-2	Resistance or Tolerance	Cold tolerance	RM336	RM118
Osa07LNT0388200.2	7	grb7-2	Morphological trait	Seed	RM505	RM336

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus