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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0388400.1

CCTGCACGGCGGCGGCCGCGCGAGGGCGGGAGCAGGCGGCGCTGCCGGCGGCGGAGGGCGGCTGAGACGGAGGCGGAGTGGGTTGCCGGCAGCTTCGCTGTGGTGTGGGCTAGCAACCACCTCCTCGGCGACGGCCACATCGCGGTGGTGCTCCTCCAGTCGTGGTCGGAGTTCGCGCGCACGGGGACGTTCGCCGGAGGCCTGAACCTTGACTGGTCGGTGCTGAGCCGTCCCCACTCCCCGCCGAGGTACAGCGCCGCCGTCGACGGGATGTTCGTGCCGTGGGACCACGAGCACGAGTTGAACCCGCTCACGGCGAGCCGCGGAGGCGAGCTTCGTCGAGCGGCTCTACTACGTCGAGGCCGCTGACATCGCCAGGCTGCGCGAGGAGGCGCGCGCAGCGCGCGACGAGCGGCTCTACTCTTTCTTGTTCGTAGCTAATTTTGCTTTCAGTTTTTTTGGCGGAGGATTTTGGGTTGGAAAGACAAGGTCGGGATCTCTTTTAAAGTTTGTTTTTCTTTTCTTTTCCCTCTTGATCGGTGGATCGATGTACTATCAGTATCAGTAATCAGCCATGCCATGCCATGTTTTGTCGAGCTC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.967636
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa07LNT0388400.1 DTM_#DNAt_MULE_japo_Os0166 Chr7 . 24904441 24906013 599
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0388400.1 osa-miR2275c Cleavage 5.0 17.669 1 23
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0388400.1 7 QRl7 Morphological trait Culm/leaf CDO497 CDO385
Osa07LNT0388400.1 7 nan Resistance or Tolerance Other soil stress tolerance C451 R1245
Osa07LNT0388400.1 7 nan Others Others RZ395 RZ264
Osa07LNT0388400.1 7 qSDS-7-2 Physiological trait Germination/dormancy RM320 RM234
Osa07LNT0388400.1 7 qCIVG7-2 Resistance or Tolerance Cold tolerance RM336 RM118
Osa07LNT0388400.1 7 grb7-2 Morphological trait Seed RM505 RM336
Osa07LNT0388400.1 7 qLVG7-2 Resistance or Tolerance Cold tolerance RM336 RM118
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus