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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0035500.1

CGACTCTCTCTCTTTCTTCCTCTCCTCCCCACCCGCGAGCCGGTAGCGGTGTCCTCCACACCCGCGGTAGCGCCCTTCCCTAACACCCTCTTCCGCGGTAGCAACAGGATGGAGGTGGCAGCAGCGTGCGGCAGCTAGACTGGAGGCGGTAGCACGAATATGGCAGTTGTGGGTGGATCTGGTAGTGGCGACGGCTCCCTCCAACCCCTCTCGCCACCCTCCCACGGCGGATTAAGCGCTGGTGGTAGCCGCGAGTGGATCTGGTGGCTGTTGCGGTGGTGGTAGCCGCCATGGGTGGATCCGTCAGCGGTGACGGCGGCCGAGGGCAGATCCAACGCCGGCGGGAGTGAAGTTCTTGGAAGTTCTTTGATGTTGTGATTCCATGATTCCTTTTGTGATTATGTGATGATGATTGTGGTTTATTTTAGGGGTGCAAAGTGTGATTGATTCGATTCCAAGTGGAATCGGTATGTGACTATTGACTTAGTGTTCTTGAATGTTTTTGGATTTCTTGGATTGATCGGGGTGAAGGGAAGCTACTCGGCTCGGTGCATCAGCTCGCGTCGAGCCGATGCATCGAACCAGCTTTTTTTTATTCGTGGAACCTCAAAGGTGTCGGTTCTAAACTAACACCAGATCCGGCACCTATTTGATTTTCACATCAGTACCGCCCTCGTGATGCCGGTTGGGAAAACCGACACCTAAGGGGATTTCTGTAGTAGTGAAAGGGGTAGAGGCCTGTTAAATATGTGATCTGAATTTTAGACTTGCAATATATTCAAATAAGTTTCCTAA

Coding Potentia
Explanation CPC Score
noncoding -1.29928
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0035500.1 1 30298623 T C
Osa01LNT0035500.1 1 30299009 C G
Osa01LNT0035500.1 1 30299184 T C
Osa01LNT0035500.1 1 30299251 T C
Osa01LNT0035500.1 1 30299277 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0035500.1 osa-miR444a-3p.1 Translation 5.0 22.049 1 21
Osa01LNT0035500.1 osa-miR444d.1 Translation 5.0 22.049 1 21
Osa01LNT0035500.1 osa-miR1858a Translation 3.5 13.843 1 21
Osa01LNT0035500.1 osa-miR1858b Translation 3.5 13.843 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0035500.1 1 An10 Morphological trait Panicle/flower nan nan
Osa01LNT0035500.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0035500.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0035500.1 1 qHUS-1-2 Others Others RM246 RG101
Osa01LNT0035500.1 1 qLRC-1 Resistance or Tolerance Drought tolerance RM237 RM302
Osa01LNT0035500.1 1 yld1.1 Physiological trait Source activity RM5 RG462
Osa01LNT0035500.1 1 nan Morphological trait Root RM3475 RM3494
Osa01LNT0035500.1 1 nan Physiological trait Source activity RG532 RM472
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus