>Osa07LNT0388800.2

CTTAGCCATCCTATACATATTTTTCTGATGTGTCTACTTCCATTACATGGCTTTTACAGTGGTCATTCAATAATATCGATGCCTTGTTCACAACAGAATCTGCGAAATCAGTTGGCCGCCACATTTTACCAAATTGGCCAGATTTGTTTCATTTCTCTGACATTCACGAAACTGAAAACCATAGCTTCCGGCCTCGAATGCAATCTTCAACGATGCAAACTGCCATCTGCCAAATCTTTCCTACCGAGGAAAACCATTGCTACCACCAGAATATCTGAACTGTGGCATCACATATCCTCCTTCCGGACGAGGACGGTATACAGTTTGTGGCACATTGAATGGTGCAAATGACGCTCCAAGTTGATCCAGAGGATGGTGGTGTACAGTTTGTCGCACATTGAGTGATGCAAATGATGGAAATTGATTCGGTGTGTTTCCCAGATAATAAGCAGGTGGATGCGAACCAGCCAATGCCGCATTTGGATGCTGGAAACCCATCCTAGGGTGTGGGCATGCCGTTGATCTGCCATCTGCGTGAGGTTGCGAGGCATTGCCAACTTCACGGAATGGAGGTGGCCTCTGGGGCCTCACGATCTCAAAGGGAGACTGCTGCACTCCAACCAGATATCCATGACTTGCCTGCATATCATAACCTGAACCTGCATTCCTTTCTCCGAATTGAGCATGGCTGCCACCAGCGAGATTTTGCTGGGAATCAGCTTTCCTTTCTCTCATCCTAGCTCTGTTGGTGCTGCGATCACTTCTATCCAGCCGGGCACGACTTGTCTTCGTGTTCTGACCACCAGCGAATTGTTTTGCGGAAGACGATTGGCTCTCTTCATTCCTGGATCTTTTTGTGGGGAGATCAGGATTGGAGGACTGCATAACACGCTTCTTGCCTTTCTTGATACTGCTTCCACTATCAGGCCGTCCTGCTTGAGATTGATGTTTTCCCTTTTGCGTCGTTTTCTTGCTGTTTCCTGCAGCATCAGGTCTACTCAATGCACGAACACGCCTTGCAGCATCTCCCCTGCTGTGCTTCTCATCTAGAGCCTTCGATCTATCTGACGGAAAGTCATCATTCTGTAGAGATTGCGCCCTTTGACAAGTAGCAGATACAAAGGTGGTAATTTGCCTACTCCTTTGCTCCAGAAAACTTGGATAGTAAAAGTGTGCTGCTGCTTCTCTTTTCCATAACTTTCCTTAATAACACTCCCAGCTACAATTCGCTTTCCTATACATTTTGAATGCCTTTTTCCACTAACAAAGTCAACAAAGGGAAGTTCTCTCATTATTAATCTACGCAAATGCTAGTGAGTACAGAAGTGCAGATTTCTACCTTTTCTCATAAACCTTCTGCTTGAATAAAACGGTATCACCTCTACAGACATCACCTTTACAGTTAATACAAAAGGATGAGCGTGGATAGATCTTCTCTGGATCCCTATCTTTGAACCTCCAATGCAACACTATTCTTTCTATGCAAGTAGCCAAGTCCCCAGTTTGGCTAAGGCCATTCTTCTTTAAATATGCTTTGCAATCAACCAGCTTAATCCCATCCAAATTTCGCCCCGCGCGGAGGAGATCGGCGATTTTTCTGCAGGAGGCCTCGCCCCGATCCACGCCTGATTGCTCCGGCTCCCGCTCCCGCTCCGCCTCCGATTCCGATTCCGACTCCTCCTCGCTCCCCGCGCCGCCGCCTTCCTCGCCGTCGCTGTCGCTGATGTCGATGTAGTAGTCCTCGTCGCTGGTGGATTCCTCGTCGTCCTCCTCCGACCCAGACTCAGATCCGGCGTCAGAATCCGACGAGATGTCGATCGCTGCGGCGCGCTCCTCCTCGACCAGCACCGCCGTCACCGCTGCGGCGGCGCGCCTCCTCGTTACAGGCATCGCAGTAAGGGCAGCGCTCCACAGGCACCCCGCCGGCGGCCGCTCTCCCTCCCTCGCCGCCTCGCCCTCCTCCGATT

Explanation	CPC Score
noncoding (weak)	-0.992229

Transcript ID	Chromosome	Locus	Ref	Alt
Osa07LNT0388800.2	7	25612414	C	T
Osa07LNT0388800.2	7	25615187	C	T
Osa07LNT0388800.2	7	25615398	T	C
Osa07LNT0388800.2	7	25615645	T	C
Osa07LNT0388800.2	7	25614751	A	G
Osa07LNT0388800.2	7	25614070	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa07LNT0388800.2	osa-miR5801	Translation	4.5	14.944	1	24
Osa07LNT0388800.2	osa-miR5803	Cleavage	3.0	13.52	1	24
Osa07LNT0388800.2	osa-miR1860-3p	Cleavage	5.0	12.02	1	22
Osa07LNT0388800.2	osa-miR2096-5p	Cleavage	4.0	20.773	1	21
Osa07LNT0388800.2	osa-miR2104	Cleavage	3.5	24.953	1	22
Osa07LNT0388800.2	osa-miR2104	Cleavage	4.5	11.234	1	22
Osa07LNT0388800.2	osa-miR2863c	Translation	5.0	16.292	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa07LNT0388800.2	7	nan	Physiological trait	Eating quality	R1245	R1789
Osa07LNT0388800.2	7	nan	Physiological trait	Eating quality	R1245	RM234
Osa07LNT0388800.2	7	nan	Resistance or Tolerance	Other soil stress tolerance	R1245	R1789
Osa07LNT0388800.2	7	qSDS-7-2	Physiological trait	Germination/dormancy	RM320	RM234
Osa07LNT0388800.2	7	qCIVG7-2	Resistance or Tolerance	Cold tolerance	RM336	RM118
Osa07LNT0388800.2	7	QRl7	Morphological trait	Culm/leaf	CDO497	CDO385
Osa07LNT0388800.2	7	qLVG7-2	Resistance or Tolerance	Cold tolerance	RM336	RM118

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus